YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO0173
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRQSPAKQR GVALIVVLLI VAMVVIIATN ITSRNQLSMR RTLNLAQYDQ AYWYAISAEE  60
   61 LAKKILKQDL DDSEGRVHKQ QYWAMSDVVF PAEYGEIAGK ISDMRSCFNL NALSVTTKDV 120
  121 ENGQPKLPLA AKQYKALLVS LGMDDFTADH LTQTLKDYID EDTVASPYGA EDAEYEARHV 180
  181 PYRAANTLMN HRSELRAVMG YTQDIYLKLL PYICVIPGSD RQLLNVNTID VEQAALLAAM 240
  241 VDNQISVGEA ESVINQRPGD GFAKIDDFYE SSSMGSIKWE DAMKSTFVID SQYFLLASGA 300
  301 KVDNAIFRME SVLKKGSGNK MDVLTRQFGG QK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	31	0.89
Non-Cytoplasmic	32	332	0.99