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Protein Overview: SO0057

General Information:
Name(s) found: SO0057 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • potassium uptake protein Trk family [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 453 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQWHPSLPL EQTQKAGKKL FGAPPFILSA SFALLILVGT CLLKLPIATE TPISWLQSLF  60
   61 TVTSAVTVTG LVVVDTGTVF TPFGQVIVAL LIQCGGLGLM TFAIVTLIAL GGKIGFLQQT 120
  121 VAKEAFNQTD TSTLVSTAKA VLVFSLLVEA VGMLILSVHW SDELGWQTSL FHGFFYTISA 180
  181 FNNAGFALSA DSLMPYVADP VVNLTITGLF IVGGLGFSVW IDLRRHKRWS KLTVYSRMMI 240
  241 TGTILINAVA LIAIYLIEYN NPNTLAPLSE LGKWLASWFQ AVTPRTAGFN TLPIDKLEDG 300
  301 SALLILVLMF IGGGSLSTAS GIKVVTFMVL ILATYSYLRR DEAAYAFKRE IPKETISKAL 360
  361 ALTMISIGVT WLAIFALVLT EKAPILDIAF EAVSAFGTVG LSRGLTSNLS GAGQGIIIFM 420
  421 MYMGRLGPLM LAYFLANPRV KKLRYAETKL AIG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] MSA 4.316991 View MSA. No confident structure predictions are available.
    2 View Details [110..311] Pfam 4.677781 No description for PF02386.7 was found. No confident structure predictions are available.
    3 View Details [312..453] FFAS03 1.01 Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • potassium channel activity
    		•  6.97421456325005 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  6.93926669126255 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  6.85197806762042 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  6.68953517879833 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  6.66667969342152 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  5.60647618241473 bayes_pls_golite062009
  • cation channel activity
    		•  5.09551684793166 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  4.88789838906314 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.80939024913503 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  4.64079808042939 bayes_pls_golite062009
  • ion channel activity
    		•  4.50553553033114 bayes_pls_golite062009
  • gated channel activity
    		•  4.47618233399604 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  4.43208330555032 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  4.39833449623615 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  4.38139555510307 bayes_pls_golite062009
  • channel activity
    		•  4.38139555510307 bayes_pls_golite062009
  • transporter activity
    		•  2.77619896060397 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.65613366364107 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  2.63030973607925 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  2.63030973607925 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.60593795082679 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle