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Protein Overview: DKSA_ECOLI

General Information:
Name(s) found: DKSA_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|78100041|sp|P0ABS1.1|DKSA_ECOLI RecName: Full=DnaK suppressor protein [NCBI NR]
  • pir||S45214 dosage-dependent dnaK suppressor protein - Escherichia coli (strain K-12) [NCBI NR]
  • gi|55669950|pdb|1TJL|J Chain J, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669949|pdb|1TJL|I Chain I, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669948|pdb|1TJL|H Chain H, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669947|pdb|1TJL|G Chain G, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669946|pdb|1TJL|F Chain F, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669945|pdb|1TJL|E Chain E, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669944|pdb|1TJL|D Chain D, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669943|pdb|1TJL|C Chain C, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669942|pdb|1TJL|B Chain B, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • gi|55669941|pdb|1TJL|A Chain A, Crystal Structure Of Transcription Factor Dksa From E. Coli [NCBI NR]
  • pir||E90647 dnaK suppressor protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • pir||E85498 dnaK suppressor protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • gi|21239001|dbj|BAB96722.1| transcriptional regulator of rRNA transcription, DnaK suppressor protein [Escherichia coli W3110] [NCBI NR]
  • gi|209746082|gb|ACI71348.1| dnaK suppressor protein [Escherichia coli] [NCBI NR]
  • gi|209746080|gb|ACI71347.1| dnaK suppressor protein [Escherichia coli] [NCBI NR]
  • gi|209746078|gb|ACI71346.1| dnaK suppressor protein [Escherichia coli] [NCBI NR]
  • gi|209746076|gb|ACI71345.1| dnaK suppressor protein [Escherichia coli] [NCBI NR]
  • gi|209746074|gb|ACI71344.1| dnaK suppressor protein [Escherichia coli] [NCBI NR]
  • DnaK suppressor protein - Escherichia coli [Swiss-Prot]
  • dnaK suppressor protein [Escherichia coli K12]gi|15829403|ref|NP_308176.1| dnaK suppressor protein [Escherichia coli O157:H7]gi|30061705|ref|NP_835876.1| dnaK suppressor protein [Shigella flexneri 2a str. 2457T]gi|15799829|ref|NP_285841.1| dnaK suppres [nrdb_11152004_Chlamydomonas]
  • DnaK suppressor protein [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Chain B, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain F, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain J, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain E, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain C, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain A, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain I, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain H, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain G, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • Chain D, Crystal Structure Of Transcription Factor Dksa From E. Coli [nr-271106-contam.fasta]
  • DnaK suppressor protein OS=Escherichia coli (strain K12) GN=dksA PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
  • RNA polymerase-binding transcription factor DksA OS=Escherichia coli (strain K12) GN=dksA PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 151 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEGQNRKTS SLSILAIAGV EPYQEKPGEE YMNEAQLAHF RRILEAWRNQ LRDEVDRTVT  60
   61 HMQDEAANFP DPVDRAAQEE EFSLELRNRD RERKLIKKIE KTLKKVEDED FGYCESCGVE 120
  121 IGIRRLEARP TADLCIDCKT LAEIREKQMA G

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. DKSA_ECOLI gi|189095939, gi...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 42.522879 Crystal structure of transcription factor DksA from E. coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.38506871722072 bayes_pls_golite062009
  • DNA binding
    		•  2.34325587943534 bayes_pls_golite062009
  • binding
    		•  2.28273695562039 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.45127726072385 bayes_pls_golite062009
  • protein binding
    		•  0.934392022502148 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.71958532653437 bayes_pls_golite062009
  • transcription activator activity
    		•  0.715538962910453 bayes_pls_golite062009
  • enzyme binding
    		•  0.70023506088536 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  0.613774016982502 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.57454737035174 bayes_pls_golite062009
  • transcription factor activity
    		•  0.559047816554475 bayes_pls_golite062009
  • transcription factor binding
    		•  0.52161600305754 bayes_pls_golite062009
  • transition metal ion binding
    		•  0.300699898963653 bayes_pls_golite062009
  • catalytic activity
    		•  0.101795606736461 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.70

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle