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Protein Overview: cpo-PE

General Information:
Name(s) found: cpo-PE / FBpp0082959 [FlyBase]
Description(s) found:
Found 13 descriptions.
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  • The gene couch potato is referred to in FlyBase by the symbol Dmel\cpo (CG31243, FBgn0000363). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:13757595..13841501. It has the cytological map location 90D1-90E1. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: synaptic transmission; olfactory behavior; cellular process. 92 alleles are reported. No phenotypic data is available. It has 7 annotated transcripts and 7 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 738 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][NAS]
    Biological Process: peripheral nervous system development [NAS]
    synaptic transmission [IMP]
    olfactory behavior [IMP]
    cellular process [IMP]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIANYQDL LGSHHQLLIA ATAAAAAAAA AEPQLQLQHL LPAAPTTPAV ISNPINSIGP  60
   61 INQISSSSHP SNNNQQAVFE KAITISSIAI KRRPTLPQTP ASAPQVLSPS PKRQCAAAVS 120
  121 VLPVTVPVPV PVSVPLPVSV PVPVSVKGHP ISHTHQIAHT HQISHSHPIS HPHHHQLSFA 180
  181 HPTQFAAAVA AHHQQQQQQQ AQQQQQAVQQ QQQQAVQQQQ VAYAVAASPQ LQQQQQQQQH 240
  241 RLAQFNQAAA AALLNQHLQQ QHQAQQQQHQ AQQQSLAHYG GYQLHRYAPQ QQQQHILLSS 300
  301 GSSSSKHNSN NNSNTSAGAA SAAVPIATSV AAVPTTGGSL PDSPAHESHS HESNSATASA 360
  361 PTTPSPAGSV TSAAPTATAT AAAAGSAAAT AAATGTPATS AVSDSNNNLN SSSSSNSNSN 420
  421 AIMENQMALA PLGLSQSMDS VNTASNEEEV RTLFVSGLPM DAKPRELYLL FRAYEGYEGS 480
  481 LLKVTSKNGK TASPVGFVTF HTRAGAEAAK QDLQGVRFDP DMPQTIRLEF AKSNTKVSKP 540
  541 KPQPNTATTA SHPALMHPLT GHLGGPFFPG GPELWHHPLA YSAAAAAELP GAAALQHATL 600
  601 VHPALHPQVP TQMTMPPHHQ TTAIHPGAAM AHMAAAAAAA AAGGGGGAAT AAAAPQSAAA 660
  661 TAAAAAAASH HHYLSSPALA SPAGSTNNAS HPGNPQIAAN APCSTLFVAN LGQFVSEHEL 720
  721 KEVFSSHGNS NWLKLLHQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] FFAS03 1.5 No description for 2j63A was found.
    2 View Details [148..321] PSI-BLAST 4.39794 Sec24
    3 View Details [322..540] PSI-BLAST 33.522879 Poly(A)-binding protein
    4 View Details [541..654] deduced N/A No confident structure predictions are available.
    5 View Details [655..738] FFAS03 1.71 NMR solution structure of TcUBP1, a single RBD-unit from Trypanosoma cruzi

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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