| Protein: | cpo-PE |
| Organism: | Drosophila melanogaster |
| Length: | 738 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpo-PE.
| Description | E-value | Query Range |
Subject Range |
|
|
218.0 | [0..1] | [614..1] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MVKIANYQDL LGSHHQLLIA ATAAAAAAAA AEPQLQLQHL LPAAPTTPAV ISNPINSIGP 60
61 INQISSSSHP SNNNQQAVFE KAITISSIAI KRRPTLPQTP ASAPQVLSPS PKRQCAAAVS 120
121 VLPVTVPVPV PVSVPLPVSV PVPVSVK
|
| Detection Method: |  |
| Confidence: | 1.5 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [148-321] |
1 11 21 31 41 51
| | | | | |
1 GHPISHTHQI AHTHQISHSH PISHPHHHQL SFAHPTQFAA AVAAHHQQQQ QQQAQQQQQA 60
61 VQQQQQQAVQ QQQVAYAVAA SPQLQQQQQQ QQHRLAQFNQ AAAAALLNQH LQQQHQAQQQ 120
121 QHQAQQQSLA HYGGYQLHRY APQQQQQHIL LSSGSSSSKH NSNNNSNTSA GAAS
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [322-540] |
1 11 21 31 41 51
| | | | | |
1 AAVPIATSVA AVPTTGGSLP DSPAHESHSH ESNSATASAP TTPSPAGSVT SAAPTATATA 60
61 AAAGSAAATA AATGTPATSA VSDSNNNLNS SSSSNSNSNA IMENQMALAP LGLSQSMDSV 120
121 NTASNEEEVR TLFVSGLPMD AKPRELYLLF RAYEGYEGSL LKVTSKNGKT ASPVGFVTFH 180
181 TRAGAEAAKQ DLQGVRFDPD MPQTIRLEFA KSNTKVSKP
|
| Detection Method: | |
| Confidence: | 33.522879 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [541-654] |
1 11 21 31 41 51
| | | | | |
1 KPQPNTATTA SHPALMHPLT GHLGGPFFPG GPELWHHPLA YSAAAAAELP GAAALQHATL 60
61 VHPALHPQVP TQMTMPPHHQ TTAIHPGAAM AHMAAAAAAA AAGGGGGAAT AAAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [655-738] |
1 11 21 31 41 51
| | | | | |
1 PQSAAATAAA AAAASHHHYL SSPALASPAG STNNASHPGN PQIAANAPCS TLFVANLGQF 60
61 VSEHELKEVF SSHGNSNWLK LLHQ
|
| Detection Method: | |
| Confidence: | 1.71 |
| Match: | 1u6fA |
| Description: | NMR solution structure of TcUBP1, a single RBD-unit from Trypanosoma cruzi |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
