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Protein Overview: rrt-1

General Information:
Name(s) found: rrt-1 / CE37225 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00004679 locus:rars-1 status:Partially_confirmed UniProt:Q65ZK0 protein_id:CCD65758.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 692 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: tRNA aminoacylation for protein translation [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    arginyl-tRNA aminoacylation [IEALink to PubMed article]
    positive regulation of embryonic development [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: nucleotide binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    aminoacyl-tRNA ligase activity [IEALink to PubMed article]
    arginine-tRNA ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANKELQQG YSDYSAASDQ AALLNRLITA MQKGELTDEL LEHIPELGDA KKLNDKLKYR  60
   61 KSILEKSIAE QAAKNKKNGV KATSTSSPSS STSAPAEKKA KKDGKTGGAP PKQAKKVDYV 120
  121 TVEDYGSSIF GRLQSLFKKA IEDAFPGLDV PLLLAETPNP QFGDYQCNSA MPIAAKLKAN 180
  181 KINKRPGDVA KEIQAKLPTK IDFVEKIDVM PAGFINIFLN TDYLRRQISL LASEGVKLPK 240
  241 LTRKRVLVDF SSPNIAKEMH VGHLRSTIIG DSICRLFEAV GFDVLRVNHI GDWGTQFGML 300
  301 IAHLYDRFPD FLKKLPDISD LQAFYKESKK RFDEDEQFKK RAYEYVVKLQ SHDGDIVKAW 360
  361 NTICDVSKKY NQIVYNYLDI KIKDVGESFY QDKMIELVKW VKTNKPDMLR EEDGRQIMFP 420
  421 TGCDIPLTVV KSDGGFTYDT SDLAALKYRM LEEKCDWNIY VVDSGQSLHL ETVYAAGRDF 480
  481 GWYDESIQRV EHVAFGLVLG DDKKKFKTRS GETVRLLDLL SEGVKRATEK LIEKGRETAM 540
  541 SEEQLVAARD AVAFGCVKYA DLSHTRTQDY VFSFDRMLED RGNTAVYLLY AYTRIQSIFE 600
  601 KDEVKNVDLV KYIASTPTLP LDHPGEFKLA KQLLKLSDCV LLVLDSLMLH QMCDYVYQLA 660
  661 TLFHDFYNEC YVIENKEGGI KTICPYASSR FV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] MSA 2.024987 View MSA. No confident structure predictions are available.
    2 View Details [82..692] PSI-BLAST 95.30103 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  5.36436884188868 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.01261843164558 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.03251266786448 bayes_pls_golite062009
  • binding
    		•  0.914435503471172 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.564359271862248 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.30220012698115 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle