Protein Overview: YOR343W-B

General Information:
Name(s) found:	YOR343W-B [SGD]
Description(s) found: SHOW ONLY BEST	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes [SGD] Chr XV from 970571-971864,971866-975884 [yeastorf4.fasta]
Organism:	Saccharomyces cerevisiae
Length:	1768 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	DNA-directed DNA polymerase activity [ISS] RNA-directed DNA polymerase activity [ISS] RNA binding [ISS] protein binding [ISS] ribonuclease activity [ISS] peptidase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HCPHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQEETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ HSEVPQAKTK VRNNVLPPHP HTSEENFSTW 180
  181 VKFYIRFLKN SNLGDIIPND QGEIKRQMTY EEHAYIYNTF QAFAPFHLLP TWVKQILEIN 240
  241 YSDILTVLCK SVSKMQTNNQ ELKDWIALAN LEYNGSTSAD TFEITVSTII QRLKENNINV 300
  301 SDRLACQLIL KGLSGDFKYL RNQYRTKTNM KLSQLFAEIQ LIYDENKIMN LNKPSQYKQH 360
  361 SEYKNVSRTS PNTTNTKVTT RNYHRTNSSK PRAAKAHNIA TSSKFSRVNN DHINESTVSS 420
  421 QYLSDDNELS LRPATERI*A NTHNRLE*RT T*SPSY*FRS FANACQISPL FTPCNTQF*N 480
  481 KHSRCSKTRH SYKCHW*SSL QLSERHQNIN KSTTHTKHSL *SIKFE*AD* PKYYCLLYQK 540
  541 HFRKIGWYST SSHSQTWRLL LVI*KIPNSF AHFKANNKQR QQKQKRK*IS ISVNTSNAWT 600
  601 C*LPKYSEVS *EECSYIFER IGY*MV*R*H ISMS*LSNRQ KHET*ACQRI TTKVPRII*A 660
  661 FSVLAYRYIW SCTSLTEKCT FLLYIVYR*E NQIPMGVPIT RPS*RIYPQC FYIDISIY*E 720
  721 PIQCSRSSYP DGSWLRVH*Q NSS*VLYEQR YYCMLYNHGR F*STRCR*TI KSYFIKRLSH 780
  781 TASLQWSTKS SMVLSSRIFY YNQKFISLTK KR*ICKTTCR FSWTGHYYYT TFRSTGYS*Q 840
  841 P*S*LENTSS WHSRLRLTSI TKLLWLYYLS SILKKDSRYY QLRYITKQSN EIGPVRLRYT 900
  901 HF***SQSFN SP*PIFY*TK *NGAVI*SKY RI*S*LSIGD *NKL*SSSER FLVPIIEPFT 960
  961 IRQGTSPKGT CTKRS*CRHI *IQYSSIYYT ISYTPYH**R EYRNGWYH*I RYYFT*TLVY1020
 1021 LHCTKPKATW *SQRYD*FDL TG*S*LWT*K HQNYTFGWYG GTIYSTK**Y KYQIQDYKQY1080
 1081 ALNR*PFVQQ *LHYSHHLHR NKGCM**YTL H*YGSARISL F*PCDS*YNA *QILKKCYGF1140
 1141 YS*RPPTS*L NP*ISYGHF* CFKRYPTHTL SSD*FQFGWY G*F*CSDYYQ K*EKIIRR*N1200
 1201 *N*GIPRHME **EYEKSGTT KIEETHKFNC SNKRSEIDQT SSNDLKI**S NYI**RQQRK1260
 1261 RQIC*SLS*R N*PTIENEHL GYKQIL**K* HRS*KSNKLN VYI*QET*WY TQS*ICCKRR1320
 1321 HSTPRYI*F* YAIQYRTSLC TDDVIVNRIR Q*LLYHTAGH ILCLLIC*YQ RRIIHKTSTT1380
 1381 FRFE**VTTF EKITLWFETK WCKLV*NH*I IFNKLLRHAR SSRMVMRI*E *SSNNLLIR*1440
 1441 *YDIIQQRLK CK*ENHNNTQ ETIRYKDNKS G*R**RNSVR HTWIRDQISK KQVHEIRYGK1500
 1501 ILDRKITQTK RTFEPKRKET *SSRSTRSLY RPG*TRNR*R *IQRESA*NA KVDWSSFICW1560
 1561 I*I*I*LTIL HQHTCSTYTI PL*ASFRHDI *VNTIHVGH* R*TINMAQKQ TYQAR**TSR1620
 1621 NKRCFIW*PT ILQVTNW*HF PTQRKSDWRK VDKGFVNMHF NYRSRNTRSQ *SYTAIEPQS1680
 1681 PCART*QETN Y*RLTY***I NDQYN*VYK* REI*KQIFWH KGNET*R*SI R**FIRILHR1740
 1741 DQEEHC*CDD KTSSDKNI*T INKQMDSL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	TOR2	No Comments	Reinke A, et al. (2004)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.82

Protein Overview: YOR343W-B

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: