Protein Overview: YBR012W-B

General Information:
Name(s) found:	YBR012W-B [SGD]
Description(s) found: Found 2 descriptions. SHOW ALL	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes [SGD]
Organism:	Saccharomyces cerevisiae
Length:	1756 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	DNA-directed DNA polymerase activity [ISS] RNA-directed DNA polymerase activity [ISS] RNA binding [ISS] protein binding [ISS] ribonuclease activity [ISS] peptidase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVR PITDDELTFL YNAFQIFAPS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
  301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 360
  361 RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 420
  421 TTEPIQLNNK HDLHLRPETY *IYSKSY*SF ***TPWTPPS RFRSITNPYK ICSSHTLSII 480
  481 *S*HKRS*CS KKKYTN*RYW *PTISLPGQH QNIIKGIAHS *HSL*LTQFE *IGCSRYHSM 540
  541 LYQKRLRTI* RHCTCTYRKI WRLLLGI*KV LASIKYLRTH HQ*CPYK*KY TQISLSFHSS 600
  601 NACACQCTDN SILT*K*HHH VF*RIRCRLV *CY*LSMS*L FNRQKHQTQT YQRFTTKIPK 660
  661 FIRTLSIPTY *HIWSSSQPT KKCTILFHLI Y**DNKIPLG LSITRPSRGL YPRCFYYDTS 720
  721 FY*KPVSGQC LGYTNGPWF* VY*QNSP*IP *KKWYNSMLY NHSGFPSTWS R*TAEPYLIR 780
  781 *LPYSTAM*W FTEPFMVLCN RIFYYCEKFT SFT*KQKICK TTCWLGRT*Y QYFVTFRSTC 840
  841 YRQ*SQP*LQ NTSSWHPRLR STSVSKLLWI YHLSSILKED SRYN*LCYSS GQGLQIRSIQ 900
  901 LRRTHFR*RL KPFNCFISIV HCVK*DPTIQ *S*HRIRP*L SI*Y*TIS*A TEKCPFKSCE 960
  961 SNRFHTPVNS Y*RFETCF*N QYSRTQRS*P QHI*I*YSSI *EEI*HPPNF RYREYRFGWY1020
 1021 A*IRCSFTCS HVPI*HT*VV VRQ*I*RFQT LRLVQ*Q*D* SYKRTNIQYG WYQ**NCSAD1080
 1081 KRTGD*EKDY TPLHLRSDTS VIRK*FTTPC RSYQNVRYLF *GKYRGIYYR *SSTPRSASR1140
 1141 TSYRIIRLF* RTSTDQFSSN *FQFGWYW*L *CLYYYQQ*E KIIRR**N*N *GITRHMEYE1200
 1201 YA*FRTSEIE ETNSPDCSCK SSKINQTNTN NLTIR*GNHL **RY*RKRKI YRGIPQRSQS1260
 1261 TVEDENLGH* QIL*QKRNRP *KSNKFNVYL QQET*RYS*S *ICCKR*YSA S*HLRLRHAI1320
 1321 QYRTSLCIND IPVTCIRQ*L LYYTIRHIFG IFVCRHQRRI IHKTSTTFRN E**VDTFEEI1380
 1381 TLWIETKWSE LVRNYQIIPD KTVWYGRSSW MVMRI*E*SS NNLLIR**YD IVQQGLKFE*1440
 1441 KNYSKTQDAI RYQDYKSR*K R**NSTRHPW LRNQISKR*I HEIRYGKLIN *ENTQIKRTF1500
 1501 ESKRKKTWCP RPTRSLYKPA RTRARRR*LQ NEGT*NAKAD RSSIICWI*I *I*PIILHQH1560
 1561 TCTTYTISVQ ASVRYDI*ID TVHMEYER*A INMAQKQTC* ANK*ISCYKR CLVW*PTVL*1620
 1621 ITNWQHIFT* WKSNWRKVHQ GFINMYFNYG SRNTRNK*IC PIIK*SKLPD TRTRQETNYQ1680
 1681 RITNRQ*IYN QYNYIQ**RE I*KQIFWY*S NETER*SIRK SSARMLYRNQ KEYCRRNDQT1740
 1741 SSDKNIQTIN KQMDSL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	TIM50	No Comments	Hazbun TR, et al. (2003)
View Run	NSE3	No Comments	Hazbun TR, et al. (2003)
View Run	TOR2	No Comments	Reinke A, et al. (2004)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.97

Protein Overview: YBR012W-B

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: