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Protein Overview: SYT1_ARATH

General Information:
Name(s) found: SYT1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|39918793|emb|CAE85115.1| synaptotagmin [Arabidopsis thaliana] [NCBI NR]
  • gi|31071599|dbj|BAC76812.1| synaptotagmin A [Arabidopsis thaliana] [NCBI NR]
  • gi|28393915|gb|AAO42365.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21593508|gb|AAM65475.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|20197724|gb|AAD29817.2| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20197686|gb|AAM15203.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18399541|ref|NP_565495.1| SYTA (SYNAPTOTAGMIN A) [Arabidopsis thaliana] [NCBI NR]
  • gi|15027959|gb|AAK76510.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 [Swiss-Prot]
  • (Q9SKR2) Expressed protein (Hypothetical protein) (Synaptotagmin A) [athaliana3702.FASTAC.txt]
  • unknown [Arabidopsis thaliana]gi|15027959|gb|AAK76510.1| unknown protein [Arabidopsis thaliana]gi|28393915|gb|AAO42365.1| unknown protein [Arabidopsis thaliana]gi|20197724|gb|AAD29817.2| expressed protein [Arabidopsis thaliana]gi|20197686|gb|AAM15203. [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 C2 domain-containing protein (sytA) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1 | ATSYTA/NTMC2T1.1/NTMC2TYPE1.1/SYTA | chr2:9021908-9024910 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • synaptotagmin [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • synaptotagmin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=541 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 541 amino acids

    Gene Ontology:
    Cellular Component: endosome [IDA]
    membrane [IDA]
    recycling endosome [IMP]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: response to cold [IMP]
    plasma membrane repair [IMP]
    spread of virus in host, cell to cell [IMP]
    endocytosis [IMP]
    response to virus [IPI]
    protein targeting to membrane [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP  60
   61 LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI IEEQIPKYKI DSVEFETLTL 120
  121 GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI 180
  181 TLKPLVPSFP CFANIYVSLM EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW 240
  241 PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT 300
  301 VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF 360
  361 TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK GFEETQAVQK APEGTPAAGG 420
  421 MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK 480
  481 LHVEVLSTSS RIGLLHPKET LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA 540
  541 S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] MSA 1.205981 View MSA. No confident structure predictions are available.
    2 View Details [166..247] PSI-BLAST 40.0 Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!); PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain; Phospholipase C isozyme D1 (PLC-D1)
    3 View Details [248..541] PSI-BLAST 46.69897 Synaptogamin I


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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