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Protein Overview: gi|5596480, gi|7...

General Information:
Name(s) found: gi|7486695 [NCBI NR]
gi|7267833 [NCBI NR]
gi|5596480 [NCBI NR]
gi|15233343 [NCBI NR]
Description(s) found:
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  • pir||T13025 hypothetical protein F8L21.130 - Arabidopsis thaliana [NCBI NR]
  • gi|7267833|emb|CAB81235.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|5596480|emb|CAB51418.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233343|ref|NP_192873.1| Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SUS7) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|5596480|emb|CAB51418.1| putative protein [Arabidopsis thaliana]gi|7486695|pir||T13025 hypothetical protein F8L21.130 - Arabidopsis thalianagi|15233343|ref|NP_192873.1| Toll-Interleukin-Resistance (TIR) domain-c [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Toll-Interleukin-Resistance (TIR) domain-containing protein, domain signature TIR exists, suggestive of a disease resistance protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr4:6894203-6899125 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr4:6894208-6899130 REVERSE LENGTH=495 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein AT4g11340 OS=Arabidopsis thaliana GN=AT4g11340 PE=4 SV=1 [ARATH-contam.fasta]
  • Putative uncharacterized protein AT4g11340 OS=Arabidopsis thaliana GN=At4g11340 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 495 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLERRQLC DSCEGSDSCE IDGHVGKETT PKLFNRARIL GSVLNGLLPC TIILLTIDAN  60
   61 FGPMIANLRR ARFRVILVKS IRSRAFKLEP DSRNPYPPWD FEGLEHNFYE MFATISQLIP 120
  121 FEFSLYMIHQ HAVESIFLND ADDDEWVMII ITHYHLDLDK TEMIECKAVA AIRDLICPRL 180
  181 GIIRSSSEGA VEIHIMVLLV EAAWFLESLT EKVLAVKGRA PPQHQVFVSF RGSDVRYNFF 240
  241 SFLKDALIKN GINVVTDEDA PRGKPIDENL LKLIKDSRIA VVIFSENYPE STWCLDELVE 300
  301 IEKQMDLKML DSCPIFFEVE TCHVKLQVAR STFNYNLLQL EHDERKKARQ ISKKAWEDAE 360
  361 KRFEGWRKAL ISVASRLGLT YKKGSNQATF VNEIVEKVKA MLDNVSSSHI TPQHQVYISF 420
  421 RSREIRNKFS SLLRAALRRS GINVLLDDEN ITRIESRDEV DRLFCRVSRV KDRTSVHYQN 480
  481 LQELDVVLEE TAGDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..213] MSA 1.176977 View MSA. No confident structure predictions are available.
    2 View Details [214..376] PSI-BLAST 26.045757 Toll-like receptor 1, TLR1
    3 View Details [377..495] FFAS03 3.5 No description for 2j67A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle