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Protein Overview: gi|15228576, gi|...

General Information:
Name(s) found: gi|7413629 [NCBI NR]
gi|15228576 [NCBI NR]
gi|11358319 [NCBI NR]
Description(s) found:
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  • gi|7413629|emb|CAB85978.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15228576|ref|NP_189841.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T47313 hypothetical protein T32A11.120 - Arabidopsis thaliana [NCBI NR]
  • (Q9M1M1) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11358319|pir||T47313 hypothetical protein T32A11.120 - Arabidopsis thalianagi|15228576|ref|NP_189841.1| aspartyl protease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartyl protease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartyl protease family protein | chr3:14676983-14680121 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 356 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQGIMRLII AAIFVMVCGY EATVLPLKRM IPPSHELDLT QLMTFDSARH GRLLQSPVHG  60
   61 SFNWKVERDT SILLSALYYT TVQIGTPPRE LDVVIDTGSD LVWVSCNSCV GCPLHNVTFF 120
  121 DPGASSSAVK LACSDKRCSS DLQKKSRCSL LESCTYKVEY GDGSVTSGYY ISDLISFDTM 180
  181 SDWTYIAFRD NSTWHPWVRQ GAIIGTFPAL CSTPCSTVSS QPLYYNPQFS HMMTVAVNDL 240
  241 RLPIDPSVFS VAKGYGTIID SGTTLVHFPG EAYDPLIQAI LNVVSQYGRP IPYESFQCFN 300
  301 ITSGISSHLV IADMFPEVHL GFAGGASMVI KPEAYLFQKF LDFDESSYNN YRRSGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..356] PSI-BLAST 58.522879 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle