YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15228576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQGIMRLII AAIFVMVCGY EATVLPLKRM IPPSHELDLT QLMTFDSARH GRLLQSPVHG  60
   61 SFNWKVERDT SILLSALYYT TVQIGTPPRE LDVVIDTGSD LVWVSCNSCV GCPLHNVTFF 120
  121 DPGASSSAVK LACSDKRCSS DLQKKSRCSL LESCTYKVEY GDGSVTSGYY ISDLISFDTM 180
  181 SDWTYIAFRD NSTWHPWVRQ GAIIGTFPAL CSTPCSTVSS QPLYYNPQFS HMMTVAVNDL 240
  241 RLPIDPSVFS VAKGYGTIID SGTTLVHFPG EAYDPLIQAI LNVVSQYGRP IPYESFQCFN 300
  301 ITSGISSHLV IADMFPEVHL GFAGGASMVI KPEAYLFQKF LDFDESSYNN YRRSGY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	25	0.60
Non-Cytoplasmic	26	356	0.95