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Protein Overview: SDR1_ARATH

General Information:
Name(s) found: SDR1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75311801|sp|Q9M2E2.1|SDR1_ARATH RecName: Full=(+)-neomenthol dehydrogenase; AltName: Full=Menthone:neomenthol reductase; AltName: Full=Short-chain dehydrogenase/reductase 1; Short=AtSDR1 [NCBI NR]
  • gi|6850889|emb|CAB71052.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20259057|gb|AAM14244.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233062|ref|NP_191681.1| short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15028055|gb|AAK76558.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T47914 hypothetical protein T20K12.120 - Arabidopsis thaliana [NCBI NR]
  • (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1 [Swiss-Prot]
  • (Q9M2E2) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|15028055|gb|AAK76558.1| unknown protein [Arabidopsis thaliana]gi|6850889|emb|CAB71052.1| putative protein [Arabidopsis thaliana]gi|11358115|pir||T47914 hypothetical protein T20K12.120 - Arabidopsis thalianagi|1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Short-chain dehydrogenase/reductase (SDR) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | short-chain dehydrogenase/reductase (SDR) family protein | chr3:22674000-22675291 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: defense response [IMP]
    Molecular Function: oxidoreductase activity [ISS]
    (+)-neomenthol dehydrogenase activity [IDA]
    (-)-menthol dehydrogenase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEETPRYAV VTGANRGIGF EICRQLASEG IRVVLTSRDE NRGLEAVETL KKELEISDQS  60
   61 LLFHQLDVAD PASITSLAEF VKTQFGKLDI LVNNAGIGGI ITDAEALRAG AGKEGFKWDE 120
  121 IITETYELTE ECIKINYYGP KRMCEAFIPL LKLSDSPRIV NVSSSMGQLK NVLNEWAKGI 180
  181 LSDAENLTEE RIDQVINQLL NDFKEGTVKE KNWAKFMSAY VVSKASLNGY TRVLAKKHPE 240
  241 FRVNAVCPGF VKTDMNFKTG VLSVEEGASS PVRLALLPHQ ETPSGCFFSR KQVSEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..296] PSI-BLAST 35.522879 Carbonyl reductase/20beta-hydroxysteroid dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • retinol dehydrogenase activity
    		•  4.1750549780559 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  2.13179384627038 bayes_pls_golite062009
  • ethanol binding
    		•  2.01597876952325 bayes_pls_golite062009
  • retinol binding
    		•  1.92497267707609 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.69771604880532 bayes_pls_golite062009
  • alcohol binding
    		•  1.51091775360793 bayes_pls_golite062009
  • 3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity
    		•  1.42175262136734 bayes_pls_golite062009
  • fatty acid synthase activity
    		•  1.23679054027553 bayes_pls_golite062009
  • benzaldehyde dehydrogenase activity
    		•  1.05577641583555 bayes_pls_golite062009
  • all-trans retinal binding
    		•  0.968189751942231 bayes_pls_golite062009
  • NADPH:quinone reductase activity
    		•  0.955727553358398 bayes_pls_golite062009
  • 11-beta-hydroxysteroid dehydrogenase activity
    		•  0.617411823427239 bayes_pls_golite062009
  • 3-oxoacyl-[acyl-carrier-protein] reductase activity
    		•  0.604742541607263 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  0.418775403210681 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.32207755075663 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  0.311551606659739 bayes_pls_golite062009
  • binding
    		•  0.144628283348863 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle