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Protein Overview: H2AV1_ARATH

General Information:
Name(s) found: H2AV1_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 136 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA]
    Biological Process: flower development [IGI]
    defense response to bacterium [IGI]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA  60
   61 TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL AIRGDEELDT LIKGTIAGGG 120
  121 VIPHIHKSLI NKTTKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 40.69897 Histone H2A

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  4.57339366278729 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.71983173426562 bayes_pls_golite062009
  • binding
    		•  3.12722734218139 bayes_pls_golite062009
  • DNA binding
    		•  1.81202026929492 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.77431079461635 bayes_pls_golite062009
  • transcription factor binding
    		•  1.49909125565453 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.37016786211811 bayes_pls_golite062009
  • protein binding
    		•  1.2861218811362 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07001118921201 bayes_pls_golite062009
  • centromeric DNA binding
    		•  1.03586371237592 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  0.725138319268162 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.483720456107869 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.38665562690801 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.0581806902793005 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle