| Protein: | H2AV1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 136 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2AV1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
195.0 | [0..1] | [136..288] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA 60
61 TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL AIRGDEELDT LIKGTIAGGG 120
121 VIPHIHKSLI NKTTKE
|
| Detection Method: |  |
| Confidence: | 40.69897 |
| Match: | 1f66C |
| Description: | Histone H2A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 4.57339366278729 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.71983173426562 | bayes_pls_golite062009 |
| binding | 3.12722734218139 | bayes_pls_golite062009 |
| DNA binding | 1.81202026929492 | bayes_pls_golite062009 |
| nucleic acid binding | 1.77431079461635 | bayes_pls_golite062009 |
| transcription factor binding | 1.49909125565453 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.37016786211811 | bayes_pls_golite062009 |
| protein binding | 1.2861218811362 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07001118921201 | bayes_pls_golite062009 |
| centromeric DNA binding | 1.03586371237592 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.725138319268162 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.483720456107869 | bayes_pls_golite062009 |
| transcription repressor activity | 0.38665562690801 | bayes_pls_golite062009 |
| histone binding | 0.218942897869955 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0581806902793005 | bayes_pls_golite062009 |
