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Protein Overview: gi|15221735, gi|...

General Information:
Name(s) found: gi|25292408 [NCBI NR]
gi|23505807 [NCBI NR]
gi|21593298 [NCBI NR]
gi|20856482 [NCBI NR]
gi|15221735 [NCBI NR]
gi|12324354 [NCBI NR]
Description(s) found:
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  • pir||G96658 probable D-ribulose-5-phosphate F9N12.9 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|23505807|gb|AAN28763.1| At1g63290/F9N12_9 [Arabidopsis thaliana] [NCBI NR]
  • gi|21593298|gb|AAM65247.1| putative D-ribulose-5-phosphate [Arabidopsis thaliana] [NCBI NR]
  • gi|20856482|gb|AAM26668.1| At1g63290/F9N12_9 [Arabidopsis thaliana] [NCBI NR]
  • gi|15221735|ref|NP_176518.1| ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|12324354|gb|AAG52146.1|AC022355_7 putative D-ribulose-5-phosphate; 35237-36732 [Arabidopsis thaliana] [NCBI NR]
  • (Q9C8T3) Putative D-ribulose-5-phosphate (At1g63290/F9N12_9) [athaliana3702.FASTAC.txt]
  • At1g63290/F9N12_9 [Arabidopsis thaliana]gi|21593298|gb|AAM65247.1| putative D-ribulose-5-phosphate [Arabidopsis thaliana]gi|20856482|gb|AAM26668.1| At1g63290/F9N12_9 [Arabidopsis thaliana]gi|12324354|gb|AAG52146.1| putative D-ribulose-5-phosphate; 3523 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribulose-phosphate 3-epimerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative | chr1:23475760-23477255 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative D-ribulose-5-phosphate; 35237-36732 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g63290/F9N12_9 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribulose-phosphate 3-epimerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative D-ribulose-5-phosphate [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Aldolase-type TIM barrel family protein | chr1:23472095-23473590 REVERSE LENGTH=227 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Ribulose-phosphate 3-epimerase OS=Arabidopsis thaliana GN=F9N12.9 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 227 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    metabolic process [IEA]
    Molecular Function: catalytic activity [IEA]
    ribulose-phosphate 3-epimerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGVSPKIAP SMLSSDFANL AAEAKRMIDL GANWLHMDIM DGHFVSNLTI GAPVIESLRK  60
   61 HTNAYLDCHL MVTNPMDYVD QMAKAGASGF TFHVEVAQEN WQELVKKIKA AGMRPGVALK 120
  121 PGTPVEQVYP LVEGTNPVEM VLVMTVEPGF GGQKFMPSMM DKVRALRNKY PTLDIEVDGG 180
  181 LGPSTIDAAA AAGANCIVAG SSVFGAPKPG DVISLLRASV EKAQPST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] PSI-BLAST 46.69897 D-ribulose-5-phosphate 3-epimerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribulose-phosphate 3-epimerase activity
    		•  3.28372503209224 bayes_pls_golite062009
  • catalytic activity
    		•  2.44231061702877 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  1.86158562896415 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  1.36492964250879 bayes_pls_golite062009
  • isomerase activity
    		•  0.935800409577999 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.764608070506109 bayes_pls_golite062009
  • orotidine-5'-phosphate decarboxylase activity
    		•  0.758594564254247 bayes_pls_golite062009
  • binding
    		•  0.595171555788202 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.288948763149344 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.1100847613283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle