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Protein Overview: RPI1_ARATH

General Information:
Name(s) found: RPI1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana GN=RPI1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 267 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: cellulose biosynthetic process [IMP]
    uridine biosynthetic process [IMP]
    Molecular Function: ribose-5-phosphate isomerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH  60
   61 AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL DSHPVVDLSI DGADEVDPAL 120
  121 NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE 180
  181 ELFRDSGCVA KLRMKIGSNG EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV 240
  241 EHGMFLGMAT TLIVAGKFGV TVKDRFG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..267] PSI-BLAST 58.30103 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribose-5-phosphate isomerase activity
    		•  2.78510459473943 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  2.15381323621148 bayes_pls_golite062009
  • 6-phosphogluconolactonase activity
    		•  1.97756803122763 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  1.65800801564277 bayes_pls_golite062009
  • catalytic activity
    		•  1.31732715713197 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15193795385115 bayes_pls_golite062009
  • binding
    		•  0.867979574569016 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.527142798518238 bayes_pls_golite062009
  • DNA binding
    		•  0.465566131334457 bayes_pls_golite062009
  • glucosamine-6-phosphate deaminase activity
    		•  0.111185777194415 bayes_pls_golite062009
  • isomerase activity
    		•  0.102415560220489 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.50

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle