YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: NRPB4_ARATH

General Information:
Name(s) found: NRPB4_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana] [NCBI NR]
  • gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana] [NCBI NR]
  • gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana] [NCBI NR]
  • gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana] [NCBI NR]
  • gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana] [NCBI NR]
  • gi|15242547|ref|NP_196554.1| NRPB4; DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1 [Swiss-Prot]
  • (O48890) 15.9 kDa subunit of RNA polymerase II [athaliana3702.FASTAC.txt]
  • 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]gi|15242547|ref|NP_ [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA polymerase II 15.9 kDa subunit (RPB15.9) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATRPB15.9, RPB15.9.9, RPB15.9 | RPB15.9 (RNA polymerase II 15.9) | chr5:3096277-3097371 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g09920 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RPB15.9 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA polymerase II, Rpb4, core protein | chr5:3096276-3097370 FORWARD LENGTH=138 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 15.9 kDa subunit of RNA polymerase II OS=Arabidopsis thaliana GN=RPB15.9 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 138 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase II, core complex [IDA][IPI]
    Biological Process: transcription from RNA polymerase II promoter [TAS]
    Molecular Function: DNA-directed RNA polymerase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEEEENAA ELKIGDEFLK AKCLMNCEVS LILEHKFEQL QQISEDPMNQ VSQVFEKSLQ  60
   61 YVKRFSRYKN PDAVRQVREI LSRHQLTEFE LCVLGNLCPE TVEEAVAMVP SLKTKGRAHD 120
  121 DEAIEKMLND LSLVKRFE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] PSI-BLAST 46.0 Subunits Rpb4 and Rpb7 of human RNA polymerase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  7.79299049190673 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  7.79299049190673 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  5.88847066010291 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  5.64167948892069 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.61328590649468 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  5.24793615322916 bayes_pls_golite062009
  • acetyltransferase activity
    		•  4.75295723552983 bayes_pls_golite062009
  • transferase activity
    		•  4.57125212908013 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.94406317857222 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.89451113558527 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.66048758356007 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.4721848902664 bayes_pls_golite062009
  • binding
    		•  1.9212205923594 bayes_pls_golite062009
  • catalytic activity
    		•  1.17990683373825 bayes_pls_golite062009
  • protein binding
    		•  0.497114544861103 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.430689791429257 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35631508447468 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.288686121121112 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.19197002346626 bayes_pls_golite062009
  • ribonuclease III activity
    		•  0.0092766021353235 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle