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Protein Overview: SYRM_ARATH

General Information:
Name(s) found: SYRM_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Arginine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=EMB1027 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 642 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: embryonic development ending in seed dormancy [IMP][NAS]
    arginyl-tRNA aminoacylation [ISS]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    aminoacyl-tRNA ligase activity [IEA]
    arginine-tRNA ligase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIFPKDENR RETLTTKLRF SADHLTFTTV TEKLRATAWR FAFSSRAKSV VAMAANEEFT  60
   61 GNLKRQLAKL FDVSLKLTVP DEPSVEPLVA ASALGKFGDY QCNNAMGLWS IIKGKGTQFK 120
  121 GPPAVGQALV KSLPTSEMVE SCSVAGPGFI NVVLSAKWMA KSIENMLIDG VDTWAPTLSV 180
  181 KRAVVDFSSP NIAKEMHVGH LRSTIIGDTL ARMLEYSHVE VLRRNHVGDW GTQFGMLIEY 240
  241 LFEKFPDTDS VTETAIGDLQ VFYKASKHKF DLDEAFKEKA QQAVVRLQGG DPVYRKAWAK 300
  301 ICDISRTEFA KVYQRLRVEL EEKGESFYNP HIAKVIEELN SKGLVEESEG ARVIFLEGFD 360
  361 IPLMVVKSDG GFNYASTDLT ALWYRLNEEK AEWIIYVTDV GQQQHFNMFF KAARKAGWLP 420
  421 DNDKTYPRVN HVGFGLVLGE DGKRFRTRAT DVVRLVDLLD EAKTRSKLAL IERGKDKEWT 480
  481 PEELDQTAEA VGYGAVKYAD LKNNRLTNYT FSFDQMLNDK GNTAVYLLYA HARICSIIRK 540
  541 SGKDIDELKK TGKLALDHAD ERALGLHLLR FAETVEEACT NLLPSVLCEY LYNLSEHFTR 600
  601 FYSNCQVNGS PEETSRLLLC EATAIVMRKC FHLLGITPVY KI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..642] PSI-BLAST 79.39794 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  5.72854650987135 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.03251266786448 bayes_pls_golite062009
  • binding
    		•  0.914435503471172 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.564359271862248 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.30220012698115 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle