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Protein Overview: SR45_ARATH

General Information:
Name(s) found: SR45_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana GN=SR45 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: nuclear speck [IDA]
    nucleolus [IDA]
    nucleoplasm [IDA]
    Biological Process: RNA splicing [NAS]
    nuclear mRNA splicing, via spliceosome [IPI]
    Molecular Function: RNA binding [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPSRGRRS PSVSGSSSRS SSRSRSGSSP SRSISRSRSR SRSLSSSSSP SRSVSSGSRS  60
   61 PPRRGKSPAG PARRGRSPPP PPSKGASSPS KKAVQESLVL HVDSLSRNVN EAHLKEIFGN 120
  121 FGEVIHVEIA MDRAVNLPRG HGYVEFKARA DAEKAQLYMD GAQIDGKVVK ATFTLPPRQK 180
  181 VSSPPKPVSA APKRDAPKSD NAAADAEKDG GPRRPRETSP QRKTGLSPRR RSPLPRRGLS 240
  241 PRRRSPDSPH RRRPGSPIRR RGDTPPRRRP ASPSRGRSPS SPPPRRYRSP PRGSPRRIRG 300
  301 SPVRRRSPLP LRRRSPPPRR LRSPPRRSPI RRRSRSPIRR PGRSRSSSIS PRKGRGPAGR 360
  361 RGRSSSYSSS PSPRRIPRKI SRSRSPKRPL RGKRSSSNSS SSSSPPPPPP PRKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 45.522879 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [183..318] FFAS03 0.987 No description for 2j63A was found.
    3 View Details [319..414] MSA 1.448991 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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