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Protein Overview: gi|15233988, gi|...

General Information:
Name(s) found: gi|7484924 [NCBI NR]
gi|7269330 [NCBI NR]
gi|4220511 [NCBI NR]
gi|15233988 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • pir||T05555 DNA polymerase III gamma chain homolog F22K18.10 - Arabidopsis thaliana [NCBI NR]
  • gi|7269330|emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4220511|emb|CAA22984.1| DNA polymerase III like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233988|ref|NP_194210.1| ATP binding / DNA-directed DNA polymerase [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 815 amino acids

    Gene Ontology:
    Cellular Component: DNA polymerase III complex [IEA]
    Biological Process: DNA replication [IEA]
    Molecular Function: ATP binding [IEA]
    DNA binding [IEA]
    DNA-directed DNA polymerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGETRRHSVD VPITRTLVAL RRVRSLRDPC TTSMSKFASL LDNVKWETGS NNGISLQFVE  60
   61 HADDACKAAA DAPVGLIPFG SYSIMEELES GCDLHKLSSK VINVEGDACS RSSERSCSDL 120
  121 SVKGRDLACN APSISHVEEA GSGGRYRTHY STKLASSVGE YGSRLGSPMN STNHSYYGDE 180
  181 DVDFDSQSNR GCGITYCWSR TPRYRGSNQS SDVEEYPLLP GNGNGESDVV TPSHEVLSRS 240
  241 LSQKFRPKSF DELVGQEVVV KCLLSTILRG RITSVYLFHG PRGTGKTSTS KIFAAALNCL 300
  301 SQAAHSRPCG LCSECKSYFS GRGRDVMETD SGKLNRPSYL RSLIKSASLP PVSSRFKVFI 360
  361 IDECQLLCQE TWGTLLNSLD NFSQHSVFIL VTSELEKLPR NVLSRSQKYH FSKVCDADIS 420
  421 TKLAKICIEE GIDFDQGAVD FIASKSDGSL RDAEIMLDQL SLLGKRITTS LAYKLIGVVS 480
  481 DDELLDLLDL AMSSDTSNTV IRARELMRSK IDPMQLISQL ANVIMDIIAG NSQESSSATR 540
  541 LRFLTRHTSE EEMQKLRNAL KILSDAEKHL RASKNQTTWL TVALLQLSNT DSSSFATDEN 600
  601 GRNQINKDVE LSSTSSGCPG DVIKSDAEKG QERNCNETVE SVWKTVTDLC CSDSLKRFLW 660
  661 KRGRLTSLTV DKGVAIAELE FYTPQHVARA EKSWKLIADS FQSVLGCNVE IQMNLVISAC 720
  721 SPPKSAKAAA SLFFGLFSCS RRMLHKSYLT TRTDSDCASE KPAVTNSLRS CQGNVLRARS 780
  781 VRSSANASSR MSCSSDQGDA TSAMCTPHIP PGEKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] deduced N/A No confident structure predictions are available.
    2 View Details [234..578] PSI-BLAST 58.69897 ADP Bound E. coli Clamp Loader Complex
    3 View Details [579..706] PSI-BLAST 9.522879 No description for 2di4A was found.
    4 View Details [707..815] PSI-BLAST 7.09691 No description for 2ayaA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.793648048433872 bayes_pls_golite062009
  • hydrolase activity
    		•  0.25100098650048 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0992488730188898 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.09921488121031 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0981611638268602 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0943886242387904 bayes_pls_golite062009
  • ATPase activity
    		•  0.0715291163469702 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle