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Protein Overview: gi|15232503, gi|...

General Information:
Name(s) found: gi|7288018 [NCBI NR]
gi|21700851 [NCBI NR]
gi|17979257 [NCBI NR]
gi|15232503 [NCBI NR]
gi|11358589 [NCBI NR]
Description(s) found:
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  • gi|7288018|emb|CAB81805.1| nucleoid DNA-binding-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21700851|gb|AAM70549.1| AT3g54400/T12E18_90 [Arabidopsis thaliana] [NCBI NR]
  • gi|17979257|gb|AAL49945.1| AT3g54400/T12E18_90 [Arabidopsis thaliana] [NCBI NR]
  • gi|15232503|ref|NP_191008.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T47599 nucleoid DNA-binding-like protein - Arabidopsis thaliana [NCBI NR]
  • (Q9M2U7) Nucleoid DNA-binding-like protein (AT3g54400/T12E18_90) [athaliana3702.FASTAC.txt]
  • AT3g54400/T12E18_90 [Arabidopsis thaliana]gi|7288018|emb|CAB81805.1| nucleoid DNA-binding-like protein [Arabidopsis thaliana]gi|17979257|gb|AAL49945.1| AT3g54400/T12E18_90 [Arabidopsis thaliana]gi|11358589|pir||T47599 nucleoid DNA-binding-like protein [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartyl protease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartyl protease family protein | chr3:20151269-20153577 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g54400/T12E18_90 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleoid DNA-binding-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr3:20140291-20142599 REVERSE LENGTH=425 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g54400/T12E18_90 OS=Arabidopsis thaliana GN=T12E18_90 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    cell wall [IDA]
    apoplast [IDA]
    plant-type cell wall [IDA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSHLLILLI SLLILKSESI NCNEKSHSSD LRVFHINSLC SPFKTSVSWA DTLLQDKARF  60
   61 LYLSSLAGVR KSSVPIASGR AIVQSPTYIV RANIGTPAQP MLVALDTSND AAWIPCSGCV 120
  121 GCSSSVLFDP SKSSSSRTLQ CEAPQCKQAP NPSCTVSKSC GFNMTYGGST IEAYLTQDTL 180
  181 TLASDVIPNY TFGCINKASG TSLPAQGLMG LGRGPLSLIS QSQNLYQSTF SYCLPNSKSS 240
  241 NFSGSLRLGP KNQPIRIKTT PLLKNPRRSS LYYVNLVGIR VGNKIVDIPT SALAFDPATG 300
  301 AGTIFDSGTV YTRLVEPAYV AVRNEFRRRV KNANATSLGG FDTCYSGSVV FPSVTFMFAG 360
  361 MNVTLPPDNL LIHSSAGNLS CLAMAAAPVN VNSVLNVIAS MQQQNHRVLI DVPNSRLGIS 420
  421 RETCT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..425] PSI-BLAST 84.045757 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle