YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15232503, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSHLLILLI SLLILKSESI NCNEKSHSSD LRVFHINSLC SPFKTSVSWA DTLLQDKARF  60
   61 LYLSSLAGVR KSSVPIASGR AIVQSPTYIV RANIGTPAQP MLVALDTSND AAWIPCSGCV 120
  121 GCSSSVLFDP SKSSSSRTLQ CEAPQCKQAP NPSCTVSKSC GFNMTYGGST IEAYLTQDTL 180
  181 TLASDVIPNY TFGCINKASG TSLPAQGLMG LGRGPLSLIS QSQNLYQSTF SYCLPNSKSS 240
  241 NFSGSLRLGP KNQPIRIKTT PLLKNPRRSS LYYVNLVGIR VGNKIVDIPT SALAFDPATG 300
  301 AGTIFDSGTV YTRLVEPAYV AVRNEFRRRV KNANATSLGG FDTCYSGSVV FPSVTFMFAG 360
  361 MNVTLPPDNL LIHSSAGNLS CLAMAAAPVN VNSVLNVIAS MQQQNHRVLI DVPNSRLGIS 420
  421 RETCT

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	425	0.97