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Protein Overview: SYPM_ARATH

General Information:
Name(s) found: SYPM_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|51970984|dbj|BAD44184.1| prolyl tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|34365755|gb|AAQ65189.1| At5g52520 [Arabidopsis thaliana] [NCBI NR]
  • gi|15237183|ref|NP_200065.1| OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|10177035|dbj|BAB10183.1| prolyl tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA6 PE=2 SV=1 [Swiss-Prot]
  • (Q9FYR6) Prolyl tRNA synthetase [athaliana3702.FASTAC.txt]
  • At5g52520 [Arabidopsis thaliana]gi|10177035|dbj|BAB10183.1| prolyl tRNA synthetase [Arabidopsis thaliana]gi|51970984|dbj|BAD44184.1| prolyl tRNA synthetase [Arabidopsis thaliana]gi|15237183|ref|NP_200065.1| tRNA synthetase class II (G, H, P and S) fami [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 TRNA synthetase class II (G [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: OVA6, PRORS1 | OVA6/PRORS1 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase | chr5:21328338-21331101 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / proline-tRNA ligase/ tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g52520 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • prolyl tRNA synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: OVA6, PRORS1 | Class II aaRS and biotin synthetases superfamily protein | chr5:21311112-21313875 FORWARD LENGTH=543 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g52520 OS=Arabidopsis thaliana GN=OVA6 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 543 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: tRNA aminoacylation for protein translation [ISS]
    regulation of photosynthesis [IMP]
    seed development [IMP]
    embryo sac development [IMP]
    ovule development [IMP]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    aminoacyl-tRNA ligase activity [IEA][ISS]
    proline-tRNA ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL  60
   61 RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP YGYAIWEAIQ DYLNVKFKET 120
  121 GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT 180
  181 QWIHSYRDLP LMINQWANVT RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI 240
  241 YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG 300
  301 TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE 360
  361 KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE MKGIPLRIEI GPRDVSSNSV 420
  421 VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL 480
  481 KDAISSGKWA RGPWSASDAD EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA 540
  541 KSY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] PSI-BLAST 89.522879 Threonyl-tRNA synthetase (ThrRS), C-terminal domain; Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain; Threonyl-tRNA synthetase (ThrRS), second 'additional' domain; Threonyl-tRNA synthetase (ThrRS)
    2 View Details [77..543] PSI-BLAST 108.0 Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.20130208252979 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.20130208252979 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.18884532579969 bayes_pls_golite062009
  • ligase activity
    		•  6.46734856052643 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  3.48471569615425 bayes_pls_golite062009
  • catalytic activity
    		•  2.36416267096403 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  1.82630084735103 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  1.67995723068335 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  1.61348476813499 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.44658852946316 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.37855221028045 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.2286808923607 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  1.22845858760023 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.50755166961092 bayes_pls_golite062009
  • binding
    		•  0.005931666351503 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle