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Protein Overview: PSB6_ARATH

General Information:
Name(s) found: PSB6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|82581522|sp|Q8LD27.2|PSB6_ARATH RecName: Full=Proteasome subunit beta type-6; AltName: Full=Proteasome subunit beta type-1; AltName: Full=20S proteasome beta subunit A-1; AltName: Full=Proteasome component CD; Flags: Precursor [NCBI NR]
  • pir||T04497 C 3.4.25.1 proteasome endopeptidase complex () chain PBA1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|7270032|emb|CAB79848.1| multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|3421099|gb|AAC32065.1| 20S proteasome subunit PBA1 [Arabidopsis thaliana] [NCBI NR]
  • gi|2827525|emb|CAA16533.1| multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|2511594|emb|CAA74028.1| multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|16323318|gb|AAL15414.1| AT4g31300/F8F16_120 [Arabidopsis thaliana] [NCBI NR]
  • gi|15450505|gb|AAK96545.1| AT4g31300/F8F16_120 [Arabidopsis thaliana] [NCBI NR]
  • gi|15235889|ref|NP_194858.1| PBA1; endopeptidase/ peptidase/ threonine-type endopeptidase [Arabidopsis thaliana] [NCBI NR]
  • Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2 [Swiss-Prot]
  • (O23716) Multicatalytic endopeptidase complex, proteasome precursor, beta subunit (EC 3.4.99.46) (AT4G31300/F8F16_120) [athaliana3702.FASTAC.txt]
  • multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana]gi|2511594|emb|CAA74028.1| multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana]gi|2827525|emb|CAA16533.1| multicata [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Proteasome subunit beta type 6 precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PBA1 | PBA1 (20S proteasome beta subunit A 1); peptidase | chr4:15188933-15190941 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PBA1; endopeptidase/ peptidase/ threonine endopeptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT4g31300/F8F16_120 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Proteasome subunit beta type 6 precursor (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) [nr-271106-contam.fasta]
  • 20S proteasome subunit PBA1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=233 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 233 amino acids

    Gene Ontology:
    Cellular Component: proteasome core complex [TAS]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: response to zinc ion [IEP]
    response to salt stress [IEP]
    ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: endopeptidase activity [IEA]
    threonine-type endopeptidase activity [IEA]
    peptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS  60
   61 AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY NNKNMLQTGL IVGGWDKYEG 120
  121 GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG 180
  181 ASGGVVRTVI INSEGVTRNF YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] PSI-BLAST 48.30103 Proteasome beta subunit (catalytic)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • endopeptidase activity
    		•  6.91642761177919 bayes_pls_golite062009
  • peptidase activity
    		•  6.84511694091156 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  6.5973571808298 bayes_pls_golite062009
  • hydrolase activity
    		•  4.47652590304822 bayes_pls_golite062009
  • threonine-type endopeptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • threonine-type peptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • catalytic activity
    		•  1.19663085909195 bayes_pls_golite062009
  • binding
    		•  1.18139971903068 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.448212653390607 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle