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Protein Overview: VPS36_ARATH

General Information:
Name(s) found: VPS36_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: ESCRT II complex [ISS]
    Biological Process: vesicle-mediated transport [ISS]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGSSSIAI GGLFENAEVT TSGRPVLRRN EVECFLLSSI DIDSEDDPPR FTALRSGNLI  60
   61 LTTHRLIWIP SQSNESVPSS IPLSAVTHIY SHKKSIKSMF HSPRIRFQAD PGSIVVTIVF 120
  121 RGKGDFDGFL SKLWECWRGR AWEEEEKSES ETSKSGSGTV AQGLYGNDGT VRMVGLAGIL 180
  181 RKEQEQWEST DKSLQDAFQD LNALMSKAKE MVSLAEKMRQ KLLSAPSSQN GSTDDEEMGS 240
  241 KEEMQQWMLS VGIISPVTKE SAGALYHQEL SRQLADFVRI PLEKAGGMIS LTDMYYHFNR 300
  301 ARGTELISPD DLWQACTLWE KFDVPVMLRK FDSGVMVIQN KSHSDEEVMS RIRMLVTKTE 360
  361 TLRVGVTASD AALTLKIAPA MAKEHLLSAE TKGLLCRDMS PDGLRFYFNL FPEIDPTNLH 420
  421 IVKEFGTYGE WIKATSLLSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] FFAS03 1.7 No description for 2cayA was found.
    2 View Details [75..440] PSI-BLAST 58.0 ESCRT-II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.00937549786103 bayes_pls_golite062009
  • binding
    		•  2.90092838613471 bayes_pls_golite062009
  • DNA binding
    		•  2.71113550605549 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.54361850638715 bayes_pls_golite062009
  • transcription factor activity
    		•  2.14867286934234 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.57710386811287 bayes_pls_golite062009
  • transcription activator activity
    		•  1.47623695451432 bayes_pls_golite062009
  • protein binding
    		•  0.653872239015235 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.555112543228389 bayes_pls_golite062009
  • hydrolase activity
    		•  0.243224523419354 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle