| Protein: | VPS36_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 440 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS36_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
446.0 | [0..19] | [415..5] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MASGSSSIAI GGLFENAEVT TSGRPVLRRN EVECFLLSSI DIDSEDDPPR FTALRSGNLI 60
61 LTTHRLIWIP SQSN
|
| Detection Method: |  |
| Confidence: | 1.7 |
| Match: | 2cayA |
| Description: | No description for 2cayA was found. |
|
Region A: Residues: [75-440] |
1 11 21 31 41 51
| | | | | |
1 ESVPSSIPLS AVTHIYSHKK SIKSMFHSPR IRFQADPGSI VVTIVFRGKG DFDGFLSKLW 60
61 ECWRGRAWEE EEKSESETSK SGSGTVAQGL YGNDGTVRMV GLAGILRKEQ EQWESTDKSL 120
121 QDAFQDLNAL MSKAKEMVSL AEKMRQKLLS APSSQNGSTD DEEMGSKEEM QQWMLSVGII 180
181 SPVTKESAGA LYHQELSRQL ADFVRIPLEK AGGMISLTDM YYHFNRARGT ELISPDDLWQ 240
241 ACTLWEKFDV PVMLRKFDSG VMVIQNKSHS DEEVMSRIRM LVTKTETLRV GVTASDAALT 300
301 LKIAPAMAKE HLLSAETKGL LCRDMSPDGL RFYFNLFPEI DPTNLHIVKE FGTYGEWIKA 360
361 TSLLSV
|
| Detection Method: | |
| Confidence: | 58.0 |
| Match: | 1w7pD |
| Description: | ESCRT-II |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.00937549786103 | bayes_pls_golite062009 |
| binding | 2.90092838613471 | bayes_pls_golite062009 |
| DNA binding | 2.71113550605549 | bayes_pls_golite062009 |
| nucleic acid binding | 2.54361850638715 | bayes_pls_golite062009 |
| transcription factor activity | 2.14867286934234 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.57710386811287 | bayes_pls_golite062009 |
| transcription activator activity | 1.47623695451432 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| transcription repressor activity | 0.555112543228389 | bayes_pls_golite062009 |
| hydrolase activity | 0.243224523419354 | bayes_pls_golite062009 |
