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Protein Overview: SYRC_ARATH

General Information:
Name(s) found: SYRC_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||A96691 arginyl-tRNA synthetase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20334712|gb|AAM16217.1| At1g66530/F28G11_14 [Arabidopsis thaliana] [NCBI NR]
  • gi|15219682|ref|NP_176826.1| arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|14030685|gb|AAK53017.1|AF375433_1 At1g66530/F28G11_14 [Arabidopsis thaliana] [NCBI NR]
  • gi|12322268|gb|AAG51163.1|AC074025_13 arginyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • Arginine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At1g66530 PE=1 SV=1 [Swiss-Prot]
  • (Q9C713) Arginyl-tRNA synthetase (At1g66530/F28G11_14) [athaliana3702.FASTAC.txt]
  • At1g66530/F28G11_14 [Arabidopsis thaliana]gi|14030685|gb|AAK53017.1| At1g66530/F28G11_14 [Arabidopsis thaliana]gi|12322268|gb|AAG51163.1| arginyl-tRNA synthetase [Arabidopsis thaliana]gi|15219682|ref|NP_176826.1| arginyl-tRNA synthetase, putative / arg [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Arginyl-tRNA synthetase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative | chr1:24822727-24825940 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / arginine-tRNA ligase/ tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g66530/F28G11_14 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • arginyl-tRNA synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Arginyl-tRNA synthetase, class Ic | chr1:24819064-24822277 REVERSE LENGTH=590 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Arginyl-tRNA synthetase OS=Arabidopsis thaliana GN=F28G11.14 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 590 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: tRNA aminoacylation for protein translation [IEA]
    arginyl-tRNA aminoacylation [IEA][ISS]
    translation [IEA]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    aminoacyl-tRNA ligase activity [IEA]
    arginine-tRNA ligase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIVASKEF TGNPRRQLAK LFDVSLKLTV PDEPNVEPLI EPGKFGDYQC NNAMGLWSLI  60
   61 KGKGTQFRGP PAVGQALIQS LPTSEMVESC SIAGPGFVNV VLSSKWMAKS IENMLVDGID 120
  121 TWAPTLSVKR AVVDFSSPNI AKEMHVGHLR STIIGDTLAR MLEYSKVEVL RRNHVGDWGT 180
  181 QFGMLIEFLF EKFPDTESVT ETAIGDLQVF YRESKLKFDL NPEFKEKAQQ AVVRLQGGDP 240
  241 VYRQAWAKIC EISRNEFAKV YKRLRIELEE KGESFYNPYI ANVIEELSSK GLVEESKGAR 300
  301 VIFIEGFKIP LIVVKSDGGF NYASTDLTAL WYRLNEEKAE WIIYVTDVGQ QQHFDMFFKA 360
  361 ARKAGWLPDD DKTYPRVSHV GFGLVLGDDN KRFRTRAAEV VRLADLLDEA KDRSKAALIE 420
  421 RGKDKEWSPE ELDQIAEAVG YGALKYADLK TNRITGYTFS FDQMLNDKGD TAVYLLYAHA 480
  481 RICSIIRKSG KDIDELKKTG KIALDHAAER ALGLHLLQFA ETVEEACTTL LPNVLCKYLY 540
  541 YLSEEFTKFY SNCQVNGSAE ETSRLLLCEA TAIVMRKCFH LLGITPVYKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..590] PSI-BLAST 88.154902 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  5.72854650987135 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.03251266786448 bayes_pls_golite062009
  • binding
    		•  0.914435503471172 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.564359271862248 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle