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Protein Overview: gi|25407963, gi|...

General Information:
Name(s) found: gi|4803959 [NCBI NR]
gi|25407963 [NCBI NR]
gi|15226358 [NCBI NR]
Description(s) found:
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  • gi|4803959|gb|AAD29831.1| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C84682 hypothetical protein At2g28220 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15226358|ref|NP_180389.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SL33) Putative chloroplast nucleoid DNA-binding protein [athaliana3702.FASTAC.txt]
  • putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana]gi|25407963|pir||C84682 hypothetical protein At2g28220 [imported] - Arabidopsis thalianagi|15226358|ref|NP_180389.1| aspartyl protease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartyl protease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartyl protease family protein | chr2:12041030-12044604 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr2:12033953-12037527 FORWARD LENGTH=756 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartyl protease-like protein OS=Arabidopsis thaliana GN=At2g28220 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 756 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEHCIVSQ NHSISMSLAT TMIVLFLQII TCFLFTTTVS SPHGFTIDLI QRRSNSSSFR  60
   61 LSKNQLQGAS PYADTLFDYN IYLMKLQVGT PPFEIAAEID TGSDLIWTQC MPCPDCYSQF 120
  121 DPIFDPSKSS TFNEQRCHGK SCHYEIIYED NTYSKGILAT ETVTIHSTSG EPFVMAETTI 180
  181 GCGLHNTDLD NSGFASSSSG IVGLNMGPRS LISQMDLPYP GLISYCFSGQ GTSKINFGTN 240
  241 AIVAGDGTVA ADMFIKKDNP FYYLNLDAVS VEDNRIETLG TPFHAEDGNI VIDSGSTVTY 300
  301 FPVSYCNLVR KAVEQVVTAV RVPDPSGNDM LCYFSETIDI FPVITMHFSG GADLVLDKYN 360
  361 MYMESNSGGL FCLAIICNSP TQEAIFGNRA QNNFLVGYDS SSLLLQGASP YADTLYDYSI 420
  421 YLMKLQVGTP PFEIVAEIDT GSDIIWTQCM PCPNCYSQFA PIFDPSKSST FREQRCNGNS 480
  481 CHYEIIYADK TYSKGILATE TVTIPSTSGE PFVMAETKIG CGLDNTNLQY SGFASSSSGI 540
  541 VGLNMGPLSL ISQMDLPYPG LISYCFSGQG TSKINFGTNA IVAGDGTVAA DMFIKKDNPF 600
  601 YYLNLDAVSV EDNLIATLGT PFHAEDGNIF IDSGTTLTYF PMSYCNLVRE AVEQVVTAVK 660
  661 VPDMGSDNLL CYYSDTIDIF PVITMHFSGG ADLVLDKYNM YLETITGGIF CLAIGCNDPS 720
  721 MPAVFGNRAQ NNFLVGYDPS SNVISFSPTN CSALWS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..406] PSI-BLAST 56.522879 Chymosin (renin)
    2 View Details [407..756] PSI-BLAST 72.221849 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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