YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PUB52_ARATH

General Information:
Name(s) found: PUB52_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 845 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein amino acid phosphorylation [IEA]
    protein ubiquitination [IEA]
    Molecular Function: ATP binding [IEA]
    ubiquitin-protein ligase activity [IEA]
    protein kinase activity [IEA]
    protein serine/threonine kinase activity [IEA]
    kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKKVVRAL SEHLSLPPPP SPSVAVAING KKKSKYVVFW ALEKFIPEGF TDFKLLYVRP  60
   61 PVSYIPTPMG IAVAVSELRE DVVSAYKQEL DWSANEMLRP YKKMFERRKV QVEVLLLDSL 120
  121 EPAAAIAEEI AGTGVTKLVI GMSLRGFFSR KIDMSSLIAT AVPRFCTVYV ISKGKLASVR 180
  181 PSESDASGSI RFERSSSTSG STDSPRLPPE YQDFLSAVSE AQSRVSPFSP ALKHSMGSNA 240
  241 VAQMDTSSSG TDQEEVSTGR GMEIVHSGIE GKKNKDESFS ASFPMGTEAY NSMSWTSKWR 300
  301 DHEDRREMRS SSSSNNHDLV NMDWGAVVPE NYSWVSHTAS HMSDGLLSVH SITDNQVNLN 360
  361 FEIEKLRAEL KHVQEMYAMA QTETVGASKK LTELNQRRFE ESEKLVELKE KEEVAKDTAS 420
  421 KEKQRYEEAM KEAEKVKELM MKEALHRREA EFKAERDARE KDKLQASLVS PGVQYQHYTW 480
  481 EEIAAATSDF AENLKIGIGA YGSVYKCNLH HTTGAVKVLH AGETQLSKQF DQELEILSKI 540
  541 RHPHLVLLLG ACPERGCLVY EYMDNGSLDD RLMLVNDTPP IPWFERFRIA LEVASALVFL 600
  601 HKSKPRPIIH RDLKPGNILL DHNFVSKLGD VGLSTMVNQD DVSSRTIFKQ TSPVGTLCYI 660
  661 DPEYQRTGII SPKSDVYSLG VVILQLITAK PAIAITHMVE EAIGDDAEFM AILDKKAGSW 720
  721 PISDTRELAA LGLCCTEMRR RDRPDLKDQI IPALERLRKV ADKAQNLLSR TPSGPPSHFI 780
  781 CPLLKGVMNE PCVAADGYTY DREAIEEWLR QKDTSPVTNL PLPNKNLIAN YTLYSAIMEW 840
  841 KSNKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] PSI-BLAST 6.045757 No description for 2gm3A was found.
    2 View Details [110..460] PSI-BLAST 3.522879 Polygalacturonase inhibiting protein PGIP
    3 View Details [461..769] PSI-BLAST 68.09691 No description for 2nruA was found.
    4 View Details [770..845] PSI-BLAST 4.045757 No description for 2f42A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • signal transducer activity
    		•  2.54176035045352 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.54176035045352 bayes_pls_golite062009
  • receptor activity
    		•  2.44108148686445 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  2.25077658159974 bayes_pls_golite062009
  • binding
    		•  1.87302803330255 bayes_pls_golite062009
  • protein kinase activity
    		•  1.43632437878638 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.16530645523007 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.12585418084562 bayes_pls_golite062009
  • kinase activity
    		•  1.11577341189523 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  1.04507575991279 bayes_pls_golite062009
  • protein binding
    		•  0.646159692466759 bayes_pls_golite062009
  • transferase activity
    		•  0.435331931559158 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.370391722473665 bayes_pls_golite062009
  • protein tyrosine kinase activity
    		•  0.231213253402712 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.154501444195573 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle