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Protein Overview: gi|16974371, gi|...

General Information:
Name(s) found: gi|8777412 [NCBI NR]
gi|16974371 [NCBI NR]
gi|15529198 [NCBI NR]
gi|15238914 [NCBI NR]
gi|15215598 [NCBI NR]
Description(s) found:
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  • gi|8777412|dbj|BAA97002.1| indole-3-glycerol phosphate synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|16974371|gb|AAL31111.1| AT5g48220/MIF21_11 [Arabidopsis thaliana] [NCBI NR]
  • gi|15529198|gb|AAK97693.1| AT5g48220/MIF21_11 [Arabidopsis thaliana] [NCBI NR]
  • gi|15238914|ref|NP_199633.1| indole-3-glycerol phosphate synthase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15215598|gb|AAK91344.1| AT5g48220/MIF21_11 [Arabidopsis thaliana] [NCBI NR]
  • (Q9LUB2) Indole-3-glycerol phosphate synthase (AT5g48220/MIF21_11) [athaliana3702.FASTAC.txt]
  • indole-3-glycerol phosphate synthase [Arabidopsis thaliana]gi|16974371|gb|AAL31111.1| AT5g48220/MIF21_11 [Arabidopsis thaliana]gi|15529198|gb|AAK97693.1| AT5g48220/MIF21_11 [Arabidopsis thaliana]gi|15215598|gb|AAK91344.1| AT5g48220/MIF21_11 [Arabidopsi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Indole-3-glycerol phosphate synthase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | indole-3-glycerol phosphate synthase, putative | chr5:19567156-19569272 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g48220/MIF21_11 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • indole-3-glycerol-phosphate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • indole-3-glycerol phosphate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g48220/MIF21_11 OS=Arabidopsis thaliana GN=At5g48220 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: metabolic process [IEA]
    tryptophan metabolic process [IEA]
    Molecular Function: indole-3-glycerol-phosphate synthase activity [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ  60
   61 EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE GNTPRNILEE IVWHKDKEVA 120
  121 QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP 180
  181 VEIAQAYEKG GAACLSVLTD DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS 240
  241 KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN 300
  301 LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI 360
  361 KQSDPGKAIS TLFGRDVSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 9.0 Crystal structure of PH1346 protein from Pyrococcus horikoshii
    2 View Details [79..379] PSI-BLAST 55.522879 THREE-DIMENSIONAL STRUCTURE OF THE BIFUNCTIONAL ENZYME PHOSPHORIBOSYLANTHRANILATE ISOMERASE: INDOLEGLYCEROLPHOSPHATE SYNTHASE FROM ESCHERICHIA COLI REFINED AT 2.0 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.15663465352598 bayes_pls_golite062009
  • indole-3-glycerol-phosphate synthase activity
    		•  3.12120866545322 bayes_pls_golite062009
  • catalytic activity
    		•  2.81275055404078 bayes_pls_golite062009
  • phosphoribosylanthranilate isomerase activity
    		•  2.655130814615 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  2.44001937916931 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.80978905789979 bayes_pls_golite062009
  • lyase activity
    		•  0.9228652996943 bayes_pls_golite062009
  • imidazoleglycerol-phosphate synthase activity
    		•  0.82314869965119 bayes_pls_golite062009
  • 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
    		•  0.302746738903759 bayes_pls_golite062009
  • isomerase activity
    		•  0.14149405165663 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle