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Protein Overview: RDR6_ARATH

General Information:
Name(s) found: RDR6_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1196 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: carpel development [IGI]
    virus induced gene silencing [IMP]
    gynoecium development [IMP]
    recognition of pollen [IMP]
    leaf development [IGI]
    [NOT]production of miRNAs involved in gene silencing by miRNA [IMP]
    defense response to virus [IMP]
    gene silencing by RNA [IMP]
    posttranscriptional gene silencing [TAS]
    production of siRNA involved in RNA interference [TAS]
    RNA interference [IMP]
    production of ta-siRNAs involved in RNA interference [IMP]
    Molecular Function: nucleic acid binding [ISS]
    RNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEGNMKKS VVTQVSIGGF GESTTAKQLT DYLEDEVGIV WRCRLKTSWT PPGSYPNFEI  60
   61 ADTSNIPSID EYKKVEPHAF VHFAVFESAG RAMDAAGQCN LILDGQPLKV SLGPKNPYSL 120
  121 NQRRRTTVPY KLAGITLEIG TLVSRDDFFV SWRAEGVDFL VDPFDNTCKF CFRKSTAFSF 180
  181 KDAVMHAVIN CDYKLELLVR DIQTVRQYKT LHGFVLILQL ASSPRVWYRT ADDDIYDTVP 240
  241 GDLLDDDDPW IRTTDFTQVG AIGRCHSYRV LISPRYENKL RTALDYFRMR RVQEERVRWP 300
  301 PRIRNEPCFG EPVSDHFFCI HHKEGISFEI MFLVNSVLHR GVFNQFQLTE RFFDLLRNQP 360
  361 KDVNIASLKH LCTYKRPVFD AYKRLKLVQE WIQKNPKLLG SHEQSEDISE IRRLVITPTR 420
  421 AYCLPPEVEL SNRVLRRYKA VAERFLRVTF MDESMQTINS NVLSYFVAPI VKDLTSSSFS 480
  481 QKTYVFKRVK SILTDGFKLC GRKYSFLAFS ANQLRDRSAW FFAEDGKTRV SDIKTWMGKF 540
  541 KDKNVAKCAA RMGLCFSSTY ATVDVMPHEV DTEVPDIERN GYVFSDGIGT ITPDLADEVM 600
  601 EKLKLDVHYS PCAYQIRYAG FKGVVARWPS KSDGIRLALR DSMKKFFSKH TILEICSWTR 660
  661 FQPGFLNRQI ITLLSVLGVP DEIFWDMQES MLYKLNRILD DTDVAFEVLT ASCAEQGNTA 720
  721 AIMLSAGFKP KTEPHLRGML SSVRIAQLWG LREKSRIFVT SGRWLMGCLD EAGILEHGQC 780
  781 FIQVSKPSIE NCFSKHGSRF KETKTDLEVV KGYVAIAKNP CLHPGDVRIL EAVDVPQLHH 840
  841 MYDCLIFPQK GDRPHTNEAS GSDLDGDLYF VAWDQKLIPP NRKSYPAMHY DAAEEKSLGR 900
  901 AVNHQDIIDF FARNLANEQL GTICNAHVVH ADRSEYGAMD EECLLLAELA ATAVDFPKTG 960
  961 KIVSMPFHLK PKLYPDFMGK EDYQTYKSNK ILGRLYRRVK EVYDEDAEAS SEESTDPSAI1020
 1021 PYDAVLEIPG FEDLIPEAWG HKCLYDGQLI GLLGQYKVQK EEEIVTGHIW SMPKYTSKKQ1080
 1081 GELKERLKHS YNSLKKEFRK VFEETIPDHE NLSEEEKNIL YEKKASAWYH VTYHPEWVKK1140
 1141 SLELQDPDES SHAAMLSFAW IAADYLARIK IRSREMGSID SAKPVDSLAK FLAQRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] MSA 1.046975 View MSA. No confident structure predictions are available.
    2 View Details [189..428] deduced N/A No confident structure predictions are available.
    3 View Details [429..1196] PSI-BLAST 130.0 No description for 2j7nA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle