YRC Public Data Repository - Protein Structure Prediction

Protein:	RDR6_ARATH
Organism:	Arabidopsis thaliana
Length:	1196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDR6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|8248473 - gi\|8248473\|gb\|AAF74208.1\|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]	1326.0	[0..1]	[1196..1]
gi\|51989472 - gi\|51989472\|gb\|AAU21242.1\| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]	1228.0	[0..1]	[1196..1]
gi\|92886759 - gi\|92886759\|gb\|ABE88477.1\| RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polym...	1228.0	[0..1]	[1196..7]
SHL2_ORYSJ - Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1	1195.0	[0..9]	[1196..26]
gi\|7489070, gi\|4... - pir\|\|T30819 RNA-directed RNA polymerase (EC 2.7.7.48) - tomato, gi\|4038592\|emb\|CAA71421.1\| RNA-direc...	1164.0	[0..14]	[1193..4]
gi\|7489197, gi\|4... - pir\|\|T30828 RNA-directed RNA polymerase - common tobacco, gi\|4138282\|emb\|CAA09697.1\| RNA-directed RN...	1142.0	[0..14]	[1193..4]
gi\|53689744 - gi\|53689744\|gb\|AAU89756.1\| RNA-directed RNA polymerase-like [Solanum tuberosum]	1139.0	[0..14]	[1193..4]
gi\|113205257 - gi\|113205257\|gb\|AAT38687.2\| RNA-directed RNA polymerase, putative [Solanum demissum]	1127.0	[0..14]	[1193..30]
gi\|40794965 - gi\|40794965\|gb\|AAR91036.1\| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]	1083.0	[0..14]	[1192..5]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEGNMKKS VVTQVSIGGF GESTTAKQLT DYLEDEVGIV WRCRLKTSWT PPGSYPNFEI  60
   61 ADTSNIPSID EYKKVEPHAF VHFAVFESAG RAMDAAGQCN LILDGQPLKV SLGPKNPYSL 120
  121 NQRRRTTVPY KLAGITLEIG TLVSRDDFFV SWRAEGVDFL VDPFDNTCKF CFRKSTAFSF 180
  181 KDAVMHAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INCDYKLELL VRDIQTVRQY KTLHGFVLIL QLASSPRVWY RTADDDIYDT VPGDLLDDDD  60
   61 PWIRTTDFTQ VGAIGRCHSY RVLISPRYEN KLRTALDYFR MRRVQEERVR WPPRIRNEPC 120
  121 FGEPVSDHFF CIHHKEGISF EIMFLVNSVL HRGVFNQFQL TERFFDLLRN QPKDVNIASL 180
  181 KHLCTYKRPV FDAYKRLKLV QEWIQKNPKL LGSHEQSEDI SEIRRLVITP TRAYCLPPEV 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [429-1196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELSNRVLRRY KAVAERFLRV TFMDESMQTI NSNVLSYFVA PIVKDLTSSS FSQKTYVFKR  60
   61 VKSILTDGFK LCGRKYSFLA FSANQLRDRS AWFFAEDGKT RVSDIKTWMG KFKDKNVAKC 120
  121 AARMGLCFSS TYATVDVMPH EVDTEVPDIE RNGYVFSDGI GTITPDLADE VMEKLKLDVH 180
  181 YSPCAYQIRY AGFKGVVARW PSKSDGIRLA LRDSMKKFFS KHTILEICSW TRFQPGFLNR 240
  241 QIITLLSVLG VPDEIFWDMQ ESMLYKLNRI LDDTDVAFEV LTASCAEQGN TAAIMLSAGF 300
  301 KPKTEPHLRG MLSSVRIAQL WGLREKSRIF VTSGRWLMGC LDEAGILEHG QCFIQVSKPS 360
  361 IENCFSKHGS RFKETKTDLE VVKGYVAIAK NPCLHPGDVR ILEAVDVPQL HHMYDCLIFP 420
  421 QKGDRPHTNE ASGSDLDGDL YFVAWDQKLI PPNRKSYPAM HYDAAEEKSL GRAVNHQDII 480
  481 DFFARNLANE QLGTICNAHV VHADRSEYGA MDEECLLLAE LAATAVDFPK TGKIVSMPFH 540
  541 LKPKLYPDFM GKEDYQTYKS NKILGRLYRR VKEVYDEDAE ASSEESTDPS AIPYDAVLEI 600
  601 PGFEDLIPEA WGHKCLYDGQ LIGLLGQYKV QKEEEIVTGH IWSMPKYTSK KQGELKERLK 660
  661 HSYNSLKKEF RKVFEETIPD HENLSEEEKN ILYEKKASAW YHVTYHPEWV KKSLELQDPD 720
  721 ESSHAAMLSF AWIAADYLAR IKIRSREMGS IDSAKPVDSL AKFLAQRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	2j7nA
Description:	No description for 2j7nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits