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Protein Overview: SHL2_ORYSJ

General Information:
Name(s) found: SHL2_ORYSJ [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 1218 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPRGGAAA QPSGRRGDTT AAAAGDLVTT QVSLGGFDAG VAAGDLADFL EHEVGLVWRC  60
   61 RVKTSWTPPD SYPDFALPTA PASASAAAAP PRYDRVPPHA FVHFARPEGA RRAADLAGET 120
  121 RLILRGKPLR VASAPDSSLR VSRRSSIAPF RFPDVRLEVG ALPSPGAFLA AWRGPDAGLD 180
  181 LSVDPFDGCC RLVFTRDTAF TFPGFREVAA IRCDVKLEFP VRDVLEVRLY RLDCSLLLRL 240
  241 AAAPLVHYRT ADDDFHEPVP FDLLDDDDPW IRTTDITPSG AIGRCGVYRI SFSARFWPKM 300
  301 DRALDYMRER RVAIVDCGGG WGPRRGLTVR DELEFGEPMQ DVFFCLQHAE GLKFPLLFMV 360
  361 NALVHKGIIN QHQLTPEFFS LLGRSEENVN VAALRDFWGD KFPVFDACGR LKKALNRVAR 420
  421 NPKLLCSKVG DDHAEVRRLV ITPTRAYCLP PEVERSNRVL RHYHEVADRF LRVTFMDEGM 480
  481 QVLNNNVLNS FTAPIVKDLM SNFFQQKTTV YKRVRMLLTE GFHMCGRKYS FLAFSSNQLR 540
  541 DKSAWFFAED RKTTVEAIRK WMGRFTSKNV AKHAARMGQC FSSTYATVTM RPDEVDESFD 600
  601 DVVHNEYIFS DGIGKITPDL ALEVAERLQL TDNPPSAYQI RFAGFKGVIA VWQGHGDGTR 660
  661 LFLRPSMRKF ESNHLVLEVV SWTKFQPGFL NRQIIILLSS LNVPDSIFWQ MQETMLSNLN 720
  721 NILSDRDVAF EVLTTSCADD GNTAALMLSA GFEPRTEPHL KAMLLAIRSA QLQDLLEKAR 780
  781 IFVPKGRWLM GCLDELGVLE QGQCFIRATV PSLNSYFVKH GSRFSSTDKN TEVILGTVVI 840
  841 AKNPCLHPGD VRILEAVDVP ELHHLVDCLV FPQKGERPHA NEASGSDLDG DLYFVTWDEK 900
  901 LIPPGKKSWN PMDYSPPEAK QLPRQVSQHD IIDFFLKNMI SENLGRICNA HVVHADLSEY 960
  961 GAMDEKCIHL AELAATAVDF PKTGKLAIMP PHLKPKVYPD FMGKEDGQSY KSEKILGRLY1020
 1021 RSIQEASNGD VVSQEVCTPN DLPYDIDLEV PGASDFLASA WQCKCSYDAQ LSALLSQYRV1080
 1081 RTEAELVTGH ITFLVKNSSK KQGDIKDRLK TAYSALRKEF KSTFESIASD QCEIGDDEKN1140
 1141 LLYEMKASAW YQVTYHPKWV EKSRGILGPD GEEIPASLSF AWIPVDYLAR IKLRCHGKVR1200
 1201 VEGQKPVERL AAYISERI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..211] MSA 3.053988 View MSA. No confident structure predictions are available.
    2 View Details [212..449] deduced N/A No confident structure predictions are available.
    3 View Details [450..1218] PSI-BLAST 133.0 No description for 2j7nA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle