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Protein Overview: FLK_ARATH

General Information:
Name(s) found: FLK_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 577 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: positive regulation of flower development [IMP]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD  60
   61 PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED VQDHSQDDLQ YQPQNQEQFQ 120
  121 LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW 180
  181 PGWPGETVFR MLVPAQKVGS IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE 240
  241 EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK 300
  301 AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP 360
  361 FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH NPPPYMQPPP RHDSYYPPPE 420
  421 MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI 480
  481 SYTRRLSGAT VTIQETRGVP GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA 540
  541 PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] MSA 8.300997 View MSA. No confident structure predictions are available.
    2 View Details [170..378] PSI-BLAST 29.522879 No description for 2annA was found.
    3 View Details [379..448] deduced N/A No confident structure predictions are available.
    4 View Details [449..577] PSI-BLAST 15.69897 HnRNP K, KH3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  5.18414740305744 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.78650555542715 bayes_pls_golite062009
  • mRNA binding
    		•  3.82977088614136 bayes_pls_golite062009
  • binding
    		•  3.45962790790935 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.28364833275102 bayes_pls_golite062009
  • DNA binding
    		•  2.03207983673692 bayes_pls_golite062009
  • transcription factor activity
    		•  1.30278154718684 bayes_pls_golite062009
  • protein binding
    		•  1.16541072642796 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.722090816226222 bayes_pls_golite062009
    		• 0.434422752178353 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.392035003865213 bayes_pls_golite062009
  • transcription activator activity
    		•  0.324382863054631 bayes_pls_golite062009
  • transcription factor binding
    		•  0.254024117548226 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0321875054165348 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle