| Protein: | FLK_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 577 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLK_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
364.0 | [0..1] | [577..1] |
|
Region A: Residues: [1-169] |
1 11 21 31 41 51
| | | | | |
1 MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD 60
61 PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED VQDHSQDDLQ YQPQNQEQFQ 120
121 LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [170-378] |
1 11 21 31 41 51
| | | | | |
1 DATVGGEEKR WPGWPGETVF RMLVPAQKVG SIIGRKGDVI KKIVEETRAR IKILDGPPGT 60
61 TERAVMVSGK EEPESSLPPS MDGLLRVHMR IVDGLDGEAS QAPPPSKVST RLLVPASQAG 120
121 SLIGKQGGTV KAIQEASACI VRVLGSEDLP VFALQDDRVV EVVGEPTSVH RALELIASHL 180
181 RKFLVDRSII PFFENQMQKP TRQMDHMPP
|
| Detection Method: | |
| Confidence: | 29.522879 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [379-448] |
1 11 21 31 41 51
| | | | | |
1 PHQSWGPPQG HAPSVGGGGY GHNPPPYMQP PPRHDSYYPP PEMRQPPMEK QPHQGISAYG 60
61 REPPMNVHVS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [449-577] |
1 11 21 31 41 51
| | | | | |
1 SAPPMVAQQV TQQMQIPLSY ADAVIGTSGS NISYTRRLSG ATVTIQETRG VPGEMTVEVS 60
61 GTGSQVQTAV QLIQNFMAEA GAPAPAQPQT VAPEQQGYNP YATHGSVYAA APTNPPGGYA 120
121 TDYSSGYGY
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 1j5kA |
| Description: | HnRNP K, KH3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.18414740305744 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78650555542715 | bayes_pls_golite062009 |
| mRNA binding | 3.82977088614136 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| transcription regulator activity | 2.28364833275102 | bayes_pls_golite062009 |
| DNA binding | 2.03207983673692 | bayes_pls_golite062009 |
| transcription factor activity | 1.30278154718684 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.722090816226222 | bayes_pls_golite062009 |
| 0.434422752178353 | bayes_pls_golite062009 | |
| transcription repressor activity | 0.392035003865213 | bayes_pls_golite062009 |
| transcription activator activity | 0.324382863054631 | bayes_pls_golite062009 |
| transcription factor binding | 0.254024117548226 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
