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Protein Overview: gi|9757727, gi|1...

General Information:
Name(s) found: gi|9757727 [NCBI NR]
gi|15237372 [NCBI NR]
Description(s) found:
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  • gi|9757727|dbj|BAB08252.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15237372|ref|NP_199419.1| GTP binding / GTPase [Arabidopsis thaliana] [NCBI NR]
  • (Q9FNL5) Similarity to guanylate binding protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237372|ref|NP_199419.1| guanylate-binding family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Guanylate-binding family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GTP binding / GTPase [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1060 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    nucleolus [IDA]
    Biological Process: immune response [ISS]
    Molecular Function: GTP binding [IEA][ISS]
    GTPase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFFGRGGK DSPADSASPS PRSYPSTSPA SSSAVTGPPR PIRLVYCDEK GKFRMDPEAV  60
   61 ATLQLVKEPI GVVSVCGRAR QGKSFILNQL LGRSNGFQVA STHKPCTKGL WLWSSPIKRT 120
  121 ALDGTEYNLL LLDSEGIDAY DQTMGGIDEA SLDRLSLVTQ MTKHIRVKAS GGTSSRSELG 180
  181 QFSPIFVWLL RDFYLDLVED NRKISPRDYL EIALRPVQGS GGDIGAKNEI RDSIRALFPD 240
  241 RECFTLVRPL NNEKDLQRLD QISLEKLRPE FGAGLDAFTK FVFEKTRPKQ LGGTVMTGPI 300
  301 LVGITQSYLD ALNNGAVPTI TSSWQSVEET ECRRAYDSGV EAYMAAFDQS KAPEEGALRE 360
  361 EHEEAVRKAL AIFNSNAVGN GSARKKFEDL LHKDLKKKFE DYKKNAFMEA DLRCTSTIQR 420
  421 MEKQLRAACH ASNANMDNVV KVLEARLAEY EASCHGPGKW QKLSVFLQQS LEGPIYDLTK 480
  481 RLIDSIAIEK NSLAMKFRSV EDAMKHLKQQ LDDSERYKLE YQKRYDESNN DKKKLEDIYR 540
  541 ERITKLQGEN SSLNERCSTL VKTVESKKEE IKEWIRNYDQ IVLKQKAVQE QLSSEMEVLR 600
  601 TRSTTSEARV AAAREQAKSA AEETKEWKRK YDYAVGEARS ALQKAASVQE RSGKETQLRE 660
  661 DALREEFSIT LANKDEEITE KATKLEKAEQ SLTVLRSDLK VAESKLESFE VELASLRLTL 720
  721 SEMTDKLDSA NKKALAYEKE ANKLEQEKIR MEQKYRSEFQ RFDEVKERCK AAEIEAKRAT 780
  781 ELADKARTDA VTSQKEKSES QRLAMERLAQ IERAERQVEN LERQKTDLED ELDRLRVSEM 840
  841 EAVSKVTILE ARVEEREKEI GSLIKETNAQ RAHNVKSLEK LLDEERKAHI AANRRAEALS 900
  901 LELQAAQAHV DNLQQELAQA RLKETALDNK IRAASSSHGK RSRFEDVVDM DIGEGSDRIL 960
  961 RTNKRARSTR GDDHGPTDEG DEDFQSHQDN GEEEEEEDYR KLTVQNLKHE LTKYDCGHLL1020
 1021 LNRGHQNKKE ILALYEAHVL PKKALAREEE RKKQREVTSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..323] PSI-BLAST 46.39794 Crystal-structure of the N-terminal Large GTPase Domain of human Guanylate Binding protein 1 (hGBP1) in complex with GMP/AlF4
    2 View Details [324..646] FFAS03 1.21 Structure of Unphosphorylated STAT1
    3 View Details [647..757] PSI-BLAST 4.221849 No description for 2iw5A was found.
    4 View Details [758..1060] PSI-BLAST 10.39794 Tropomyosin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle