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Protein Overview: PEX7_ARATH

General Information:
Name(s) found: PEX7_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9502414|gb|AAF88113.1|AC021043_6 peroxisomal targeting signal type 2 receptor, Pex7p [Arabidopsis thaliana] [NCBI NR]
  • gi|89274147|gb|ABD65594.1| At1g29260 [Arabidopsis thaliana] [NCBI NR]
  • pir||B86415 peroxisomal targeting signal type 2 receptor, Pex7p - Arabidopsis thaliana [NCBI NR]
  • gi|15218882|ref|NP_174220.1| PEX7; peroxisome matrix targeting signal-2 binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana GN=PEX7 PE=1 SV=2 [Swiss-Prot]
  • (Q9LP54) Peroxisomal targeting signal type 2 receptor, Pex7p [athaliana3702.FASTAC.txt]
  • peroxisomal targeting signal type 2 receptor, Pex7p - Arabidopsis thalianagi|15218882|ref|NP_174220.1| peroxisomal targeting signal type 2 receptor (PEX7) [Arabidopsis thaliana]gi|9502414|gb|AAF88113.1| peroxisomal targeting signal type 2 receptor, Pex [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peroxisomal targeting signal type 2 receptor (PEX7) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PEX7 | PEX7 (peroxin 7) | chr1:10224909-10225862 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PEX7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • peroxisomal targeting signal type 2 receptor, Pex7p [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g29260 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PEX7, ATPEX7 | peroxin 7 | chr1:10224923-10225876 FORWARD LENGTH=317 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 317 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: protein targeting to peroxisome [IMP]
    Molecular Function: protein binding [IPI]
    peroxisome matrix targeting signal-2 binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA  60
   61 DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR SFQEHAREVQ SVDYNPTRRD 120
  121 SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR 180
  181 EPGSTMIIPA HDFEILSCDW NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR 240
  241 KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG 300
  301 WDELVYVWQQ GMDPRAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..317] PSI-BLAST 69.0 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  3.31804728298431 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.1056443224755 bayes_pls_golite062009
  • tubulin binding
    		•  2.76945430061825 bayes_pls_golite062009
  • microtubule binding
    		•  2.72684103222924 bayes_pls_golite062009
  • dynein binding
    		•  2.54821997913979 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  2.43196533618619 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • dynactin binding
    		•  1.85146647785657 bayes_pls_golite062009
  • actin filament binding
    		•  1.5197243426595 bayes_pls_golite062009
  • peroxisome matrix targeting signal-2 binding
    		•  1.26984584070766 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • microtubule plus-end binding
    		•  1.01166033978052 bayes_pls_golite062009
  • transporter activity
    		•  0.692270256454453 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.579815310385678 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.520265606469501 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.518364053507325 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.485054404024611 bayes_pls_golite062009
    		• 0.45054027253231 bayes_pls_golite062009
  • dynein intermediate chain binding
    		•  0.443846546939402 bayes_pls_golite062009
  • snoRNA binding
    		•  0.283655461357951 bayes_pls_golite062009
  • histone binding
    		•  0.166694897714113 bayes_pls_golite062009
  • chromatin binding
    		•  0.145491963066342 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.121183207943714 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.118975415284669 bayes_pls_golite062009
  • DNA binding
    		•  0.0736878329528894 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle