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Protein Overview: gi|15218624, gi|...

General Information:
Name(s) found: gi|5903080 [NCBI NR]
gi|25406230 [NCBI NR]
gi|15218624 [NCBI NR]
Description(s) found:
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  • gi|5903080|gb|AAD55638.1|AC008017_11 Similar to part of disease resistance protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C96754 Similar to part of disease resistance protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15218624|ref|NP_177434.1| disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9SSN5) Similar to part of disease resistance protein [athaliana3702.FASTAC.txt]
  • Similar to part of disease resistance protein [Arabidopsis thaliana]gi|25406230|pir||C96754 Similar to part of disease resistance protein [imported] - Arabidopsis thalianagi|15218624|ref|NP_177434.1| disease resistance protein (TIR-NBS class), putative [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Disease resistance protein (TIR-NBS class) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | disease resistance protein (TIR-NBS class), putative | chr1:27439295-27440548 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Similar to part of disease resistance protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr1:27435634-27436887 FORWARD LENGTH=380 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Similar to part of disease resistance protein OS=Arabidopsis thaliana GN=F3N23.11 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 380 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHTATKYD VFLSFRGHDT RQNFISFLYK ELVRRSIRTF KDDKELENGQ RISSELKRTI  60
   61 EVSRFAVVVV SETYAASSWC LDELVTIMDF EKKGSITVMP IFYGVEPNHV RWQTGVLAEQ 120
  121 FKKHGSREDH EKVLKWRQAL TNFAQLSGDC SGDDDSKLVD KIANEISNKK TIYATINNGK 180
  181 NLVGIDTHMK ELNRLMHMNC NKVTVRMVGI WARGGDGRSA LAKYVYQTSC QQFDSHCFLG 240
  241 NVKTISQGRH SAHLHDEFLR NIKREDSNKQ CLKNQKVLLV ADNVTKVKQL EALAGDFSSF 300
  301 GPGSVVIITT DNKGLLNSYG ITDVYEVEHL KFCGILRSLG FKKRAAAFQR ALCRAKSFAT 360
  361 ECFCCQSSSI SGYGKVTDLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..200] FFAS03 4.55 Toll-like receptor 1, TLR1
    2 View Details [201..380] PSI-BLAST 6.0 Structure of the apoptotic protease-activating factor 1 bound to ADP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.166909062418251 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle