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View Structure Prediction Details

Protein: gi|15218624, gi|...
Organism: Arabidopsis thaliana
Length: 380 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15218624, gi|....

Description E-value Query
Range
Subject
Range
gi|82542049 - gi|82542049|gb|ABB82032.1| TIR-NBS disease resistance-like protein [Populus trichocarpa]
293.0 [0..3] [374..6]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHTATKYD VFLSFRGHDT RQNFISFLYK ELVRRSIRTF KDDKELENGQ RISSELKRTI  60
   61 EVSRFAVVVV SETYAASSWC LDELVTIMDF EKKGSITVMP IFYGVEPNHV RWQTGVLAEQ 120
  121 FKKHGSREDH EKVLKWRQAL TNFAQLSGDC SGDDDSKLVD KIANEISNKK TIYATINNGK 180
  181 NLVGIDTHMK ELNRLMHMNC 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.55
Match: 1fyvA
Description: Toll-like receptor 1, TLR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.166909062418251 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [201-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKVTVRMVGI WARGGDGRSA LAKYVYQTSC QQFDSHCFLG NVKTISQGRH SAHLHDEFLR  60
   61 NIKREDSNKQ CLKNQKVLLV ADNVTKVKQL EALAGDFSSF GPGSVVIITT DNKGLLNSYG 120
  121 ITDVYEVEHL KFCGILRSLG FKKRAAAFQR ALCRAKSFAT ECFCCQSSSI SGYGKVTDLV 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle