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Protein Overview: TRPB1_ARATH

General Information:
Name(s) found: TRPB1_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||A31393 tryptophan synthase (EC 4.2.1.20) beta-1 chain precursor - Arabidopsis thaliana [NCBI NR]
  • gi|9758261|dbj|BAB08760.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] [NCBI NR]
  • gi|22137210|gb|AAM91450.1| AT5g54810/MBG8_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|21592983|gb|AAM64932.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] [NCBI NR]
  • gi|166892|gb|AAA32878.1| tryptophan synthase beta subunit [NCBI NR]
  • gi|15239755|ref|NP_200292.1| TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|14194117|gb|AAK56253.1|AF367264_1 AT5g54810/MBG8_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|136251|sp|P14671.1|TRPB1_ARATH RecName: Full=Tryptophan synthase beta chain 1, chloroplastic; Flags: Precursor [NCBI NR]
  • gi|110742593|dbj|BAE99210.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] [NCBI NR]
  • Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1 [Swiss-Prot]
  • (P14671) Tryptophan synthase beta chain 1, chloroplast precursor (EC 4.2.1.20) [Swiss-Prot]
  • tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana]gi|9758261|dbj|BAB08760.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana]gi|22137210|gb|AAM91450.1| AT5g54810/MBG8_7 [Arabidopsis thaliana]gi|14194117|gb|AAK56253.1| AT [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Tryptophan synthase beta chain 1, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: TRPB, TRP2, TSB1 | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT) | chr5:22282031-22283964 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • tryptophan synthase beta subunit [nr-271106-contam.fasta]
  • TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g54810/MBG8_7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Tryptophan synthase beta chain 1, chloroplast precursor [nr-271106-contam.fasta]
  • | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan synthase beta-subunit 1 | chr5:22264805-22266738 REVERSE LENGTH=470 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 470 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA][ISS]
    Biological Process: response to oxidative stress [IEP]
    response to salt stress [IEP]
    tryptophan biosynthetic process [TAS]
    indoleacetic acid biosynthetic process [TAS]
    Molecular Function: tryptophan synthase activity [IDA][IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP  60
   61 VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL ESAFYALATD DDFQRELAGI 120
  121 LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG 180
  181 KKRIIAETGA GQHGVATATV CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG 240
  241 TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG 300
  301 KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA 360
  361 MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA EYYSITDEEA LEAFKRVSRL 420
  421 EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..470] PSI-BLAST 124.0 X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.77857340461162 bayes_pls_golite062009
  • catalytic activity
    		•  2.76038225023173 bayes_pls_golite062009
  • lyase activity
    		•  2.54165185299539 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  1.82148750304597 bayes_pls_golite062009
  • cysteine synthase activity
    		•  1.54736143994982 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.52790731142158 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.943946746392831 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.86525519885835 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.8463142805916 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.57533596285038 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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