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Protein Overview: TBP2_ARATH

General Information:
Name(s) found: TBP2_ARATH [Swiss-Prot]
Description(s) found:
Found 24 descriptions.
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  • TATA-box-binding protein 2 OS=Arabidopsis thaliana GN=TBP2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 200 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    Biological Process: transcription initiation [IDA]
    Molecular Function: DNA binding [ISS]
    RNA polymerase II transcription factor activity [ISS]
    TATA-binding protein binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV  60
   61 IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI VQKLGFPAKF KDFKIQNIVG 120
  121 SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE 180
  181 TYTAFENIYP VLREFRKVQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..200] PSI-BLAST 88.69897 TATA-box binding protein (TBP), C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA polymerase III transcription factor activity
    		•  8.4318102330583 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  8.41238647819051 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.66773099672992 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.97397050058114 bayes_pls_golite062009
  • DNA binding
    		•  3.68758425895596 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.4119217152884 bayes_pls_golite062009
  • binding
    		•  3.25203283623613 bayes_pls_golite062009
  • RNA polymerase I transcription factor activity
    		•  3.24777019705869 bayes_pls_golite062009
  • transcription factor activity
    		•  2.17821704710246 bayes_pls_golite062009
  • transcription factor binding
    		•  1.86204668268867 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.59579825271822 bayes_pls_golite062009
  • protein binding
    		•  0.938536348073543 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.312991469396539 bayes_pls_golite062009
  • transcription activator activity
    		•  0.199341831249925 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle