| Protein: | TBP2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 200 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBP2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
332.0 | [0..1] | [200..1] |
|
Region A: Residues: [1-200] |
1 11 21 31 41 51
| | | | | |
1 MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV 60
61 IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI VQKLGFPAKF KDFKIQNIVG 120
121 SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE 180
181 TYTAFENIYP VLREFRKVQQ
|
| Detection Method: |  |
| Confidence: | 88.69897 |
| Match: | 1qn3A |
| Description: | TATA-box binding protein (TBP), C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA polymerase III transcription factor activity | 8.4318102330583 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 8.41238647819051 | bayes_pls_golite062009 |
| transcription regulator activity | 4.66773099672992 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.97397050058114 | bayes_pls_golite062009 |
| DNA binding | 3.68758425895596 | bayes_pls_golite062009 |
| nucleic acid binding | 3.4119217152884 | bayes_pls_golite062009 |
| binding | 3.25203283623613 | bayes_pls_golite062009 |
| RNA polymerase I transcription factor activity | 3.24777019705869 | bayes_pls_golite062009 |
| transcription factor activity | 2.17821704710246 | bayes_pls_golite062009 |
| transcription factor binding | 1.86204668268867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.59579825271822 | bayes_pls_golite062009 |
| protein binding | 0.938536348073543 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.312991469396539 | bayes_pls_golite062009 |
| transcription activator activity | 0.199341831249925 | bayes_pls_golite062009 |
