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Protein Overview: SYFB_ARATH

General Information:
Name(s) found: SYFB_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • Phenylalanine--tRNA ligase beta subunit, cytoplasmic OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 598 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    phenylalanine-tRNA ligase complex [ISS]
    Biological Process: phenylalanyl-tRNA aminoacylation [IEA][ISS]
    translation [IEA]
    Molecular Function: nucleotide binding [IEA]
    magnesium ion binding [IEA]
    ATP binding [IEA]
    RNA binding [IEA]
    phenylalanine-tRNA ligase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTISVGRDR LFAALGESYT QEKFEELCFS FGIELDDVTT EKAIIRKEKH IDEEADDDEE  60
   61 IIYKIEIPAN RPDLLCLEGL AQSLRVFIEK QEIPTYTLAD ISKDKILQMN VKPETSKIRP 120
  121 FVVCAVLRGV TFDEARYNSF IDLQDKLHQN ICRRRSLVAI GTHDLDTLQG PFTYEALPPT 180
  181 DINFVPLKQT KSFRADELIE FYKSDMKLKK FLHIIENSPV FPVLYDSKRT VLSLPPIING 240
  241 AHSAITLQTK NVFIECTATD LTKAKIVLNT MVTTFSEFCA RKFEIEPVEV TYDDGKSYIY 300
  301 PDLAVYDMEV PLSFITDSIG VSLKVEQVTS LLTRMQLQAE QAKSSDNQCA IKVHVPPSRS 360
  361 DVLHPCDVME DVAIAYGFNN IPTRKPASIK PLTLNELTDL LRIEIAMCVY TEVVTWLLCS 420
  421 HKENFAMLNR EDVNSAVIVG NPRSADFEAM RRALMPGLLK TVGHNNKYPK PIKIFEISDV 480
  481 VMLDESKDVG ASNRRHLAAL YCGATSGFEL IHGLVDRIME VMAIPFLTIH ENNVPINEKD 540
  541 GYYVKLSQEP EFLPGRQASI IVRGKHIGNF GIVHPEVLNN FDIPDPCSYL ELDIEAIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 65.522879 No description for 2cxiA was found.
    2 View Details [380..598] PSI-BLAST 45.30103 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • phenylalanine-tRNA ligase activity
    		•  13.8919118344182 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  12.5698315343202 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  12.5698315343202 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  12.5592545638101 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.61548498770105 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.07594942154162 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.973820663472435 bayes_pls_golite062009
  • binding
    		•  0.951197041515827 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.864670700044417 bayes_pls_golite062009
  • DNA binding
    		•  0.621789297870471 bayes_pls_golite062009
  • transcription factor activity
    		•  0.265631643816467 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle