YRC Public Data Repository - Protein Structure Prediction

Protein:	SYFB_ARATH
Organism:	Arabidopsis thaliana
Length:	598 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYFB_ARATH.

Description	E-value	Query Range	Subject Range
gi\|199602551, gi... - gi\|200390106\|ref\|ZP_03216717.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subs... SYFB_SALTY - Phenylalanine--tRNA ligase beta subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|197262355, gi... - gi\|197262355\|ref\|ZP_03162429.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=pheT] [protein=phenylalanyl-tRNA synthetase subunit beta] [protein_id=YP_005237200.1] [locatio... gi\|197247557, gi... - gi\|197247557\|ref\|YP_002146699.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica sub... gi\|238910846 - gi\|238910846\|ref\|ZP_04654683.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subsp... SYFB_SALTY - Phenylalanyl-tRNA synthetase beta chain OS=Salmonella typhimurium GN=pheT PE=3 SV=3 gi\|205332319, gi... - gi\|205332319\|gb\|EDZ19083.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e... gi\|205327737, gi... - gi\|205327737\|gb\|EDZ14501.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e... SYFB_SALTY - Phenylalanine--tRNA ligase beta chain OS=Salmonella typhimurium GN=pheT PE=3 SV=3 gi\|194469827, gi... - gi\|194469827\|ref\|ZP_03075811.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subs... gi\|194449577, gi... - gi\|194449577\|ref\|YP_002045345.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subs... gi\|168822197, gi... - gi\|205341293\|gb\|EDZ28057.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e... gi\|168240841, gi... - gi\|205339386\|gb\|EDZ26150.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e...	561.0	[0..6]	[597..98]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTISVGRDR LFAALGESYT QEKFEELCFS FGIELDDVTT EKAIIRKEKH IDEEADDDEE  60
   61 IIYKIEIPAN RPDLLCLEGL AQSLRVFIEK QEIPTYTLAD ISKDKILQMN VKPETSKIRP 120
  121 FVVCAVLRGV TFDEARYNSF IDLQDKLHQN ICRRRSLVAI GTHDLDTLQG PFTYEALPPT 180
  181 DINFVPLKQT KSFRADELIE FYKSDMKLKK FLHIIENSPV FPVLYDSKRT VLSLPPIING 240
  241 AHSAITLQTK NVFIECTATD LTKAKIVLNT MVTTFSEFCA RKFEIEPVEV TYDDGKSYIY 300
  301 PDLAVYDMEV PLSFITDSIG VSLKVEQVTS LLTRMQLQAE QAKSSDNQCA IKVHVPPSRS 360
  361 DVLHPCDVME DVAIAYGFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.522879
Match:	2cxiA
Description:	No description for 2cxiA was found.

Predicted Domain #2

Region A:
Residues: [380-598]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIPTRKPASI KPLTLNELTD LLRIEIAMCV YTEVVTWLLC SHKENFAMLN REDVNSAVIV  60
   61 GNPRSADFEA MRRALMPGLL KTVGHNNKYP KPIKIFEISD VVMLDESKDV GASNRRHLAA 120
  121 LYCGATSGFE LIHGLVDRIM EVMAIPFLTI HENNVPINEK DGYYVKLSQE PEFLPGRQAS 180
  181 IIVRGKHIGN FGIVHPEVLN NFDIPDPCSY LELDIEAIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1b70A
Description:	Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phenylalanine-tRNA ligase activity	13.8919118344182	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	12.5698315343202	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	12.5698315343202	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	12.5592545638101	bayes_pls_golite062009
ligase activity	6.92073480193262	bayes_pls_golite062009
glycine-tRNA ligase activity	2.61548498770105	bayes_pls_golite062009
threonine-tRNA ligase activity	2.18642354927	bayes_pls_golite062009
serine-tRNA ligase activity	2.07594942154162	bayes_pls_golite062009
catalytic activity	1.99372273395202	bayes_pls_golite062009
alanine-tRNA ligase activity	1.82594054955281	bayes_pls_golite062009
lysine-tRNA ligase activity	1.72324031407565	bayes_pls_golite062009
histidine-tRNA ligase activity	1.72215103383322	bayes_pls_golite062009
transcription regulator activity	0.973820663472435	bayes_pls_golite062009
binding	0.951197041515827	bayes_pls_golite062009
asparagine-tRNA ligase activity	0.921492123574877	bayes_pls_golite062009
nucleic acid binding	0.864670700044417	bayes_pls_golite062009
DNA binding	0.621789297870471	bayes_pls_golite062009
transcription factor activity	0.265631643816467	bayes_pls_golite062009
aspartate-tRNA ligase activity	0.00572514744734753	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: