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Protein Overview: RPI2_ARATH

General Information:
Name(s) found: RPI2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91805381|gb|ABE65420.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|6226027|sp|Q9ZU38.1|RPIA_ARATH RecName: Full=Probable ribose-5-phosphate isomerase; AltName: Full=Phosphoriboisomerase [NCBI NR]
  • gi|4262236|gb|AAD14529.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana] [NCBI NR]
  • pir||H84422 probable ribose 5-phosphate isomerase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|17978867|gb|AAL47405.1| At2g01290/F10A8.17 [Arabidopsis thaliana] [NCBI NR]
  • gi|15809810|gb|AAL06833.1| At2g01290/F10A8.17 [Arabidopsis thaliana] [NCBI NR]
  • gi|15226223|ref|NP_178238.1| ribose-5-phosphate isomerase [Arabidopsis thaliana] [NCBI NR]
  • Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=1 SV=1 [Swiss-Prot]
  • Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana GN=RPI2 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZU38) Probable ribose 5-phosphate isomerase (EC 5.3.1.6) (Phosphoriboisomerase) [athaliana3702.FASTAC.txt]
  • putative ribose 5-phosphate isomerase [Arabidopsis thaliana]gi|17978867|gb|AAL47405.1| At2g01290/F10A8.17 [Arabidopsis thaliana]gi|15809810|gb|AAL06833.1| At2g01290/F10A8.17 [Arabidopsis thaliana]gi|25329401|pir||H84422 probable ribose 5-phosphate isom [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable-ribose 5-phosphate isomerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribose-5-phosphate isomerase | chr2:149191-149988 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Probable ribose-5-phosphate isomerase (Phosphoriboisomerase) [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative ribose 5-phosphate isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribose-5-phosphate isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g01290/F10A8.17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RPI2 | ribose-5-phosphate isomerase 2 | chr2:149192-149989 REVERSE LENGTH=265 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 265 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: cell death [IMP]
    vegetative to reproductive phase transition of meristem [IMP]
    Molecular Function: ribose-5-phosphate isomerase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS  60
   61 TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP LSDLDAHPVI DLSIDGADEV 120
  121 DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA 180
  181 EKLRSLLEGY GCEANLRLGE KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE 240
  241 HGMFLDMAST VIIAGELGVK IKNKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..265] PSI-BLAST 58.69897 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribose-5-phosphate isomerase activity
    		•  2.23318567990318 bayes_pls_golite062009
  • 6-phosphogluconolactonase activity
    		•  1.97756803122763 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15193795385115 bayes_pls_golite062009
  • binding
    		•  0.867979574569016 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  0.61058174487002 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.527142798518238 bayes_pls_golite062009
  • DNA binding
    		•  0.465566131334457 bayes_pls_golite062009
  • catalytic activity
    		•  0.424959044318554 bayes_pls_golite062009
  • glucosamine-6-phosphate deaminase activity
    		•  0.111185777194415 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  0.075853172283603 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle