YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PRP4L_ARATH

General Information:
Name(s) found: PRP4L_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 554 amino acids

    Gene Ontology:
    Cellular Component: nuclear speck [IDA]
    spliceosomal complex [ISS]
    CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: embryo sac egg cell differentiation [IMP]
    cell fate determination [IMP]
    nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR  60
   61 PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER QEKALQDLLV KRRAAAMAVP 120
  121 TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE 180
  181 VDDEVLEYPF FTEGPKELRE ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK 240
  241 HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER 300
  301 ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD 360
  361 KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG LDSLARVWDL RTGRSILVFQ 420
  421 GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF 480
  481 LATASYDMKV NIWSGRDFSL VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN 540
  541 DDEDEEKETM DIDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] FFAS03 1.05 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
    2 View Details [98..554] PSI-BLAST 75.0 No description for 2ovpB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle