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Protein Overview: IF5A2_ARATH

General Information:
Name(s) found: IF5A2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|21537051|gb|AAM61392.1| Initiation factor 5A-2 (eIF-5A 2) [Arabidopsis thaliana] [NCBI NR]
  • gi|20138663|sp|Q93VP3.1|IF5A2_ARATH RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2 [NCBI NR]
  • gi|20136453|gb|AAM11676.1|AF492850_1 putative initiation factor 5A [Arabidopsis thaliana] [NCBI NR]
  • gi|15810061|gb|AAL06956.1| At1g26630/T24P13_1 [Arabidopsis thaliana] [NCBI NR]
  • gi|15222741|ref|NP_173985.1| FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|14517506|gb|AAK62643.1| At1g26630/T24P13_1 [Arabidopsis thaliana] [NCBI NR]
  • Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=ELF5A-2 PE=1 SV=1 [Swiss-Prot]
  • (Q93VP3) Eukaryotic translation initiation factor 5A-2 (eIF-5A 2) [Swiss-Prot]
  • Initiation factor 5A-2 (eIF-5A 2) [Arabidopsis thaliana]gi|20136453|gb|AAM11676.1| putative initiation factor 5A [Arabidopsis thaliana]gi|15810061|gb|AAL06956.1| At1g26630/T24P13_1 [Arabidopsis thaliana]gi|20138663|sp|Q93VP3|IF52_ARATH Eukaryotic trans [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Eukaryotic translation initiation factor 5A-2 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: FBR12 | FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor | chr1:9205955-9207085 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Initiation factor 5A-2 (eIF-5A 2) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) [nr-271106-contam.fasta]
  • translation initiation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g26630/T24P13_1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative initiation factor 5A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: FBR12, ATELF5A-2, ELF5A-2 | Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein | chr1:9205968-9207098 FORWARD LENGTH=159 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 159 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: response to bacterium [IEP]
    host programmed cell death induced by symbiont [IDA]
    response to wounding [IEP]
    response to cadmium ion [IEP]
    translational initiation [IMP][ISS]
    programmed cell death [IMP]
    defense response to bacterium [IMP]
    Molecular Function: translation initiation factor activity [IMP][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV  60
   61 AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF VSLLTDSGGT KDDLKLPTDD 120
  121 GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..159] PSI-BLAST 40.0 Structural Analysis of Leishmania mexicana eukaryotic initiation factor 5a

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • U6 snRNA binding
    		•  7.69488393698619 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  6.60650180781768 bayes_pls_golite062009
  • structural molecule activity
    		•  6.0174879876147 bayes_pls_golite062009
  • translation initiation factor activity
    		•  5.09596850944863 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.89165617439497 bayes_pls_golite062009
  • translation elongation factor activity
    		•  3.58178742491041 bayes_pls_golite062009
  • DNA binding
    		•  3.38561002225202 bayes_pls_golite062009
  • binding
    		•  2.83465364476231 bayes_pls_golite062009
  • RNA binding
    		•  1.76502371106766 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.74890841494748 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.69669059514663 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.54386990150255 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.38349489974693 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • transcription activator activity
    		•  0.990244702925461 bayes_pls_golite062009
  • mRNA binding
    		•  0.883475899526061 bayes_pls_golite062009
  • transcription factor activity
    		•  0.859071050218437 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.594907498313479 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.39251242706379 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.39251242706379 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35186207828037 bayes_pls_golite062009
  • nuclease activity
    		•  0.26446253803519 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle