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Protein Overview: DXR_ARATH

General Information:
Name(s) found: DXR_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8131928|gb|AAF73140.1|AF148852_1 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|21537002|gb|AAM61343.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXR [Arabidopsis thaliana] [NCBI NR]
  • gi|20466081|gb|AAM19962.1| AT5g62790/MQB2_90 [Arabidopsis thaliana] [NCBI NR]
  • gi|20259653|gb|AAM14344.1| putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) [Arabidopsis thaliana] [NCBI NR]
  • gi|20148249|gb|AAM10015.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|15451204|gb|AAK96873.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|15292737|gb|AAK92737.1| putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXR [Arabidopsis thaliana] [NCBI NR]
  • gi|15241970|ref|NP_201085.1| DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE); 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|15010666|gb|AAK73992.1| AT5g62790/MQB2_90 [Arabidopsis thaliana] [NCBI NR]
  • gi|12644032|sp|Q9XFS9.2|DXR_ARATH RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic; Short=1-deoxyxylulose-5-phosphate reductoisomerase; Short=DXP reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase; Fla [NCBI NR]
  • gi|10177457|dbj|BAB10848.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] [NCBI NR]
  • 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2 [Swiss-Prot]
  • (Q9XFS9) 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor (EC 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) [athaliana3702.FASTAC.txt]
  • putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) [Arabidopsis thaliana]gi|15292737|gb|AAK92737.1| putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXR [Arabidopsis thaliana]gi|10177457|dbj|BAB10848.1| 1-deoxy-D-xylulose 5-phosphate [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PDE129, DXR | DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) | chr5:25231584-25234518 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXR [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g62790/MQB2_90 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXR [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) [nr-271106-contam.fasta]
  • | Symbols: DXR, PDE129 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | chr5:25214358-25217292 REVERSE LENGTH=477 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway [IDA][TAS]
    response to cadmium ion [IEP]
    isoprenoid biosynthetic process [TAS]
    Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTLNSLSPA ESKAISFLDT SRFNPIPKLS GGFSLRRRNQ GRGFGKGVKC SVKVQQQQQP  60
   61 PPAWPGRAVP EAPRQSWDGP KPISIVGSTG SIGTQTLDIV AENPDKFRVV ALAAGSNVTL 120
  121 LADQVRRFKP ALVAVRNESL INELKEALAD LDYKLEIIPG EQGVIEVARH PEAVTVVTGI 180
  181 VGCAGLKPTV AAIEAGKDIA LANKETLIAG GPFVLPLANK HNVKILPADS EHSAIFQCIQ 240
  241 GLPEGALRKI ILTASGGAFR DWPVEKLKEV KVADALKHPN WNMGKKITVD SATLFNKGLE 300
  301 VIEAHYLFGA EYDDIEIVIH PQSIIHSMIE TQDSSVLAQL GWPDMRLPIL YTMSWPDRVP 360
  361 CSEVTWPRLD LCKLGSLTFK KPDNVKYPSM DLAYAAGRAG GTMTGVLSAA NEKAVEMFID 420
  421 EKISYLDIFK VVELTCDKHR NELVTSPSLE EIVHYDLWAR EYAANVQLSS GARPVHA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..477] PSI-BLAST 134.0 No description for 2eghA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
    		•  3.73695658845135 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.60548927745815 bayes_pls_golite062009
  • catalytic activity
    		•  2.54843319568228 bayes_pls_golite062009
  • glyceraldehyde-3-phosphate dehydrogenase activity
    		•  2.42852631499395 bayes_pls_golite062009
  • glucose-6-phosphate dehydrogenase activity
    		•  2.40527964325542 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  1.41676087939212 bayes_pls_golite062009
  • glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
    		•  1.08771562641109 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.07588236908906 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  0.841370849960815 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle