Protein Overview: PRP43_ARATH

General Information:
Name(s) found:	PRP43_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|3913425\|sp\|O22899.1\|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [NCBI NR] gi\|28416499\|gb\|AAO42780.1\| At2g47250/T8I13.9 [Arabidopsis thaliana] [NCBI NR] pir\|\|H84912 probable pre-mRNA splicing factor RNA helicase [imported] - Arabidopsis thaliana [NCBI NR] gi\|2275203\|gb\|AAB63825.1\| putative pre-mRNA splicing factor RNA helicase [Arabidopsis thaliana] [NCBI NR] gi\|22135845\|gb\|AAM91108.1\| At2g47250/T8I13.9 [Arabidopsis thaliana] [NCBI NR] gi\|15226549\|ref\|NP_182247.1\| RNA helicase, putative [Arabidopsis thaliana] [NCBI NR] Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1 [Swiss-Prot] Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1 [Swiss-Prot] (O22899) Putative pre-mRNA splicing factor ATP-dependent RNA helicase [Swiss-Prot] At2g47250/T8I13.9 [Arabidopsis thaliana]gi\|28416499\|gb\|AAO42780.1\| At2g47250/T8I13.9 [Arabidopsis thaliana]gi\|2275203\|gb\|AAB63825.1\| putative pre-mRNA splicing factor RNA helicase [Arabidopsis thaliana]gi\|25409033\|pir\|\|H84912 probable pre-mRNA splicing [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Putative pre-mRNA splicing factor ATP-dependent RNA helicase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: \| RNA helicase, putative \| chr2:19406993-19410051 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] putative pre-mRNA splicing factor RNA helicase [Arabidopsis thaliana] [nr-271106-contam.fasta] Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [nr-271106-contam.fasta] At2g47250/T8I13.9 [Arabidopsis thaliana] [nr-271106-contam.fasta] ATP binding / ATP-dependent helicase/ RNA helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: \| RNA helicase family protein \| chr2:19399923-19402981 REVERSE LENGTH=729 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	729 amino acids
Gene Ontology:
Cellular Component:	membrane [IDA] chloroplast envelope [IDA]
Biological Process:	NONE FOUND
Molecular Function:	nucleic acid binding [IEA] nucleotide binding [IEA] ATP binding [IEA] RNA helicase activity [ISS] nucleoside-triphosphatase activity [IEA] ATP-dependent helicase activity [IEA] helicase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE  60
   61 KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ FVLDAVVADN SDKGRKWLVG 120
  121 CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP 180
  181 LLERYKVIIL DEAHERTLAT DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL 240
  241 MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN 300
  301 KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT 360
  361 IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR SGRAGRTRPG KCFRLYTEKS 420
  421 FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL 480
  481 DDEGNLTKTG EIMSEFPLDP QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA 540
  541 ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS 600
  601 RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH 660
  661 KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS NFPNCEAKRA LEKLYKKRER 720
  721 EKNESKNRK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
	4.704140727858	bayes_pls_golite062009
binding	2.44689197844883	bayes_pls_golite062009
RNA binding	2.29590582680214	bayes_pls_golite062009
structural constituent of ribosome	1.57653963868443	bayes_pls_golite062009
RNA helicase activity	1.42791449104435	bayes_pls_golite062009
nucleic acid binding	1.41477043612798	bayes_pls_golite062009
RNA-dependent ATPase activity	1.39335733374328	bayes_pls_golite062009
ATP-dependent RNA helicase activity	1.36724390116598	bayes_pls_golite062009
DNA binding	1.11699929651302	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
transcription regulator activity	0.989226939888218	bayes_pls_golite062009
mRNA binding	0.76699944561918	bayes_pls_golite062009
helicase activity	0.6191010101321	bayes_pls_golite062009
motor activity	0.61636596887462	bayes_pls_golite062009
structural molecule activity	0.596382945962261	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.461763181659193	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.458831409927227	bayes_pls_golite062009
pyrophosphatase activity	0.455976987338331	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.422944846459286	bayes_pls_golite062009
snRNA binding	0.418985924846052	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	0.338958888186454	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.29664013896754	bayes_pls_golite062009
ATP-dependent helicase activity	0.29664013896754	bayes_pls_golite062009
translation release factor activity	0.178286731022211	bayes_pls_golite062009
translation termination factor activity	0.151456842619444	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
protein binding	0.071010918255742	bayes_pls_golite062009
transcription factor activity	0.0434163635422169	bayes_pls_golite062009
cytoskeletal protein binding	0.0272673919333979	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..447]	PSI-BLAST	66.30103	No description for 2hyiC was found.
2	View Details	[448..578]	FFAS03	1.49	No description for 2v8oA was found.
3	View Details	[579..729]	Pfam	26.920819	No description for PF07717.7 was found. No confident structure predictions are available.

Protein Overview: PRP43_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: